| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3264 |
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| Symbol | fliF |
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| ID | 5712321 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3429384 |
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| End bp | 3431060 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641269192 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_001534598 |
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| Protein GI | 159045804 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCATGG AGCAGATACG CACCACATGG ACCGGGCTTG GGCTGCGGAA CCAATTGATC
GCGATTGCCG CGGTCCTTGG GGTATTCGGG GCGCTCTTGG CCTTGTCCCG TACGGCGTTG
GCCCCGGATT ACGCCTTGTT GTATTCAGGC CTCGAACCTG CCGCCGCGGG GGAGGTCATT
GCCAACCTCG AACAGCGCGG GATTGCGCAC CAGGTGCGTG GAACAGGCAT CTACGTGGAC
CGCGCGCAGC AGGACAGGCT GCGAATCGCC CTGGCTGCCG AAGGACTGCC GGCCGCGGGC
GGGGCGGGGT ACGAATTGCT CGATTCCCTG TCCGGGTTCG GTACCACCTC GCAGATGTTC
GATGCGGCAT ATTGGCGAGC CAAGGAAGGC GAGCTGGCAC GGACGATCGC CTCGAGCGCC
TCGGTGCGCT CGGCCCGGGT GCATGTTTCA GCCGCCAGCA GCCGTCCCTT CGAGGCGCGC
AAGGAACCCA CGGCCTCTGT TTTCCTGACG CCCGCGCGCG GCTCGCTGTC GGGCGGGCAG
GCCGATGCGT TGAGGTATCT CGTGTCCTCC GCCATTGCCG GGATGCGGCC GGAGAACGTG
TCGATCATAG ACGCCGTCAG CGGCACCATG CTGACCGGGG AGGGCCCGGC CTCCGCCATC
GCGGAGCAGA CGACGAAGGC GGACGCGCTG AAACTGCGGA TCGAACGGCT GCTCGAGGCC
CGGGTGGGCG TCGGCAACGC GTTCGTCGAA GTGAATATCG AAACCGAGCG GGATCGCGAG
CGGATCGTGG AACGGGTGTT CGACCCCAAC GGCACCGTAC CGGTGAGCCG CGAGACGACC
GAAAGCACCT TGCAGAGTTC CCGGGATTCA GAAGGGTCGG TGTCGGTGGC GAGCAACCTG
CCCGACGGCG ATGCCAATGC CGAGTCCGCC AAGGATGCTC AGAACGAAAC CGAAACGCGG
GAGCGGATCA ACTACGAGGT GTCCGAGACC CAGCGCGAGA TCGAGCGGGG GCCAGGGGCC
ACCAAGCGCC TGACCGTCGC AGTCCTTGTC AATGGTATTC CCAGCGTGTC CGAAGACGGG
ACCGTCTCTT TCACGCCCCG CCCGGACCGG GAGATGGCGG ACCTCGAAGA GCTGGTCAAA
TCCACCGTCG GGTTCGACGA GACCCGGGGC GATGTCATCA CCCTGCGCTC GATGGAGATG
CCGGGAAGTG CCGCACCCGA CCCGGTGGAG AGCAGCGGCT GGTTCGCGCC GCAGCCGGTC
GACACAATGT CGGTTATCCA GATCGCGGCA TTGGCCCTCG TGACGCTGTT CCTGGGACTG
TTCGTTTTGC GCCCGATCCT GAAATCAGCC CCCGCCCAGG CACAATTGCC CGCGGCCGAG
ACCGCCGGGC TGCCTGCGCC GGCCGGTTCC GCGACCCGCG CCGGCGAGAC GGGGTCCAAC
CTCGTCGCCC GGCTGCAGCA ATCCGCGGGC ACCGCTGCGA AGGAGGCAAC GCCAGAGGTC
CTGTCCGGCG AGATCAGCAC CGACGCGTCG GATGTCGCTG CGGCCGCCCG AACGCTCACG
TCTCAGGACG AGGAGCGCGA CCCGGTCACG CGCCTGCGGC AGCTCATCAA GGAACGGGAG
ACCGAGACCA TCGAAATCCT GAGCTCCTGG ATCAATGAAA ACGAGGAGGT ACGCTGA
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| Protein sequence | MAMEQIRTTW TGLGLRNQLI AIAAVLGVFG ALLALSRTAL APDYALLYSG LEPAAAGEVI
ANLEQRGIAH QVRGTGIYVD RAQQDRLRIA LAAEGLPAAG GAGYELLDSL SGFGTTSQMF
DAAYWRAKEG ELARTIASSA SVRSARVHVS AASSRPFEAR KEPTASVFLT PARGSLSGGQ
ADALRYLVSS AIAGMRPENV SIIDAVSGTM LTGEGPASAI AEQTTKADAL KLRIERLLEA
RVGVGNAFVE VNIETERDRE RIVERVFDPN GTVPVSRETT ESTLQSSRDS EGSVSVASNL
PDGDANAESA KDAQNETETR ERINYEVSET QREIERGPGA TKRLTVAVLV NGIPSVSEDG
TVSFTPRPDR EMADLEELVK STVGFDETRG DVITLRSMEM PGSAAPDPVE SSGWFAPQPV
DTMSVIQIAA LALVTLFLGL FVLRPILKSA PAQAQLPAAE TAGLPAPAGS ATRAGETGSN
LVARLQQSAG TAAKEATPEV LSGEISTDAS DVAAAARTLT SQDEERDPVT RLRQLIKERE
TETIEILSSW INENEEVR
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