| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3228 |
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| Symbol | dapF |
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| ID | 5712285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3397087 |
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| End bp | 3397935 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641269156 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001534562 |
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| Protein GI | 159045768 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0035809 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCCA TGACCGATAC CGCACCAGAC GGCCTGCCCT TCTTCAAGAT GCACGGGCTT
GGCAACGACT TCGTCGTGAT CGACGCGCGC GCCGCACCCC GGCCCGTGTC GGACCGTCTG
GTCGCGGCCC TGGCCGACCG GCACCGGGGC GTCGGGTTCG ACCAGTTGGC CGTGATCGCG
CCCGCCCCCG AAGCGGACGC CCACCTGACC TTCTACAACG CCGACGGCTC GACCTCCGCG
GCTTGCGGCA ACGCCACCCG CTGCATCGCG CGGATGATCC TGGACGAGAC CGGCGCGACA
GCCCTGCGCC TGTCCACCGA CCGGGGCCTG CTGCTGGCCG AGGACGCGGG CGACGGCCTC
ACCCGCGTCA ACATGGGCCA GCCCCAGACG CTCTGGTCCG AGGTGCCCCT GGCCGAGGCG
ATGGACACGC TCGAACTGCC GATCGAAGGC ACCCCCACCG CCACGGGCAT GGGCAACCCC
CATTGCACCT TCTTCGTCGC CGATGCCGAG GCGATCCCGC TGGACACCTT CGGACCGCGC
TACGAACACC ACCCGCTCTA TCCCCAGCGC ACCAATGTGC AGGTGGCCCA GATCGTCGGC
CCCGACCATA TCCGCATGCG CGTCTGGGAA CGGGGCGTGG GCGTGACGCT GGCCTCGGGC
TCGTCCTCCT GCGCCACCGG TGTCGCGGCT GCCCGGCGCG GGCTGACCGG GCGCAAGACG
CGGATCGACC TTGATGGCGG CACGCTCTGG ATCGACTGGC GCGAGGACGG GGTCTGGATG
ACCGGCCCGA ACATGACCGT GTTCGAGGGC CGCCTGACAC CGCAATTCCT GGCCGAGACC
GCCCGATGA
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| Protein sequence | MPAMTDTAPD GLPFFKMHGL GNDFVVIDAR AAPRPVSDRL VAALADRHRG VGFDQLAVIA
PAPEADAHLT FYNADGSTSA ACGNATRCIA RMILDETGAT ALRLSTDRGL LLAEDAGDGL
TRVNMGQPQT LWSEVPLAEA MDTLELPIEG TPTATGMGNP HCTFFVADAE AIPLDTFGPR
YEHHPLYPQR TNVQVAQIVG PDHIRMRVWE RGVGVTLASG SSSCATGVAA ARRGLTGRKT
RIDLDGGTLW IDWREDGVWM TGPNMTVFEG RLTPQFLAET AR
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