Gene Dshi_3223 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3223 
Symbol 
ID5712279 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3392688 
End bp3393194 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content63% 
IMG OID641269150 
Producthypothetical protein 
Protein accessionYP_001534557 
Protein GI159045763 
COG category 
COG ID 
TIGRFAM ID[TIGR01764] DNA binding domain, excisionase family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.190123 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.897241 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGAAGC GGTTCCCCGC CAATCGGATC AAGACCCACC GCATCTACAC GGTCTGGGAG 
GTTTCCGACG CGCTCGGGTG CCACAAGCAG ACGGTCGGGC GCTGGATCAG GTCCGGGGCG
CTTGCAGCGG ACATGCGCAA GCGTCCTTGG CTCATCGACG GGCGCGATCT GAAGGCGTTT
CTGGGCCAAC GGGTCGCTCG GCTCCGCTGC AAACTGGCGC TGCATCACTG CTACTGCCTT
GGCTGCAAGG CACCTCAGGA ACCCGACGGC CGGATGGCGG ACTACGTCCA GCAGACCACG
GAAACCGGGC AGCTCACAGG GATCTGCCCG GCCTGTGGCG CCCTCATGAA CAAGATGGTT
AGGCGCGCCG ATCTGGAGGC CATCCGGGCC AAACTGGAGG TCACAATCCA ACAGGCCTCG
CCAAGATTAG TGTCCCTTGA AGATCCCCGT TCAAATGTCA CCTCCACTAG GGAGCGCCGG
ACCCATGGCA AGACGCAACA GCGATAA
 
Protein sequence
MAKRFPANRI KTHRIYTVWE VSDALGCHKQ TVGRWIRSGA LAADMRKRPW LIDGRDLKAF 
LGQRVARLRC KLALHHCYCL GCKAPQEPDG RMADYVQQTT ETGQLTGICP ACGALMNKMV
RRADLEAIRA KLEVTIQQAS PRLVSLEDPR SNVTSTRERR THGKTQQR