| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3210 |
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| Symbol | ymdC |
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| ID | 5712266 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3375531 |
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| End bp | 3377120 |
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| Gene Length | 1590 bp |
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| Protein Length | 529 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641269137 |
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| Product | putative phospholipase D protein |
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| Protein accession | YP_001534544 |
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| Protein GI | 159045750 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1502] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.824664 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGGTC TGGGTGCTCT CGATCCGACC GCAAACGCAG CAGCCCGAAC GAGGCATATC
GTGAAAACCT TCTTCCTGAT GGCCAGTCTG AGCGTGATGC TTCTGTCCGC TTGCGGACCA
GCGGTGCGCA CATTCGAGCA GACGCCGTCT TATGCACCGG ACCAGCCGAC ACGCACGCAG
CTTGCAAGGG CCGTCAGCCA GCTGGGCGAC CCGCGCGATG GCCGGTCCGG TGTCAGATTG
ATCGGCAACG GAGAAGAGGC GATCGCCGCC CGCCTTGCTC TGGCCGCCGC CGCCGAGCAG
ACGATCGACG CCCAATACTA CCTCTTGCAC GATGACCTCA CCGGACATGT CTTCGCCTGG
AGCCTTCTTC AAGCCGCGGA TCGGGGCGTG CGGGTCCGTC TCTTGCTCGA TGACATGGAC
ACAGGGGGCT ATGACGCTGC CACGGCGGCC CTCGATGCCC ATGAAAACGT CGAGATTCGG
CTCTTCAATC CGTTCTGGCG GGATCAGAAC CTGCTTGCCG CCGGTCTGAC CGACTTCAAG
CGGATCAACC GGCGGATGCA CAACAAGTCG ATGACCGCCG ACAATGCCAT GTCGATTGTC
GGGGGGCGGA ATATCGGCGA CGAGTATTTC CTCGCCAAGC GGGACATGAA CTATTCGGAT
ATCGACGTTC TGGTGGCAGG CCCCGTTGTG GACGCGGTGT CCACCAACTT CGATGCATAC
TGGAACAGCA GGTTCGCGGT GCCCGCCCGC GCCGTGATCG GCGCACCGAA AGACATGAGC
CTCGATGCAG CGCGCGACCG TCTCGACGCA CTCATCGGGG ATGCTCGCGA ACTGGAATAT
GCCAGCGTCA TCCGCCGGGC GAGGGCGCAG AACTTCACCG CCTCGACCCT CGCGCTCGAA
TGGGTGCCTG CAAGGATGTA TTCCGACCCG CCGTCGAAGG CGGCAGGTGC AAACGATGAC
GGGGAAATCC TGGCGTCGCA GCTCGCAAAA TACTTCGCCG CGGCGAAATC GGACGTTCAG
ATCATTTCCG CCTATTTCGT GCCGCGCGAC CGCGGCAGCG CCTGGCTGGC CGAGCTCGAG
GACAAGGGCG TCGAGGTTTC CGTAGTCACC AACTCACTGG CTTCCAACGA TGTGAAACCG
GTTTATGCGC ATTATGCCAA GGACAGACGA CGGCTTCTGG AAAGCGGGGT CAGCCTTTAT
GAGCTGCGAC CCGATGCGGA CCGCGCGCAG CGGCGGGGCG TGAACTGGGG TCAATCGCAA
TCCGGTTTGC ACGCCAAGGC CTTCACCATC GATGATCGGT ACCTTTTCGT GGGGTCGTTC
AACTGGGACC CGCGTTCGGT GAACATCAAC ACCGAGATGG GCATCCTGAT CGACTCGCCC
ACGTTCACCG CCAACGCCTC GGAAGCTCTG TCAGAGGCCC TGGAGGCCGA GGCATTTGCC
GTTCGGCTCG AAGAGGACAA TCGGATCTCG TGGACCGAGA CCGACCCGGA TGGCACCCAA
AGGATCTATT ATCATGAGCC GACCGGGTCC CCCTGGGACC ACTTCGTCGC GGGGCTCTAT
GCTCTGCTGC CCATCGGCTC GCAACTCTGA
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| Protein sequence | MGGLGALDPT ANAAARTRHI VKTFFLMASL SVMLLSACGP AVRTFEQTPS YAPDQPTRTQ
LARAVSQLGD PRDGRSGVRL IGNGEEAIAA RLALAAAAEQ TIDAQYYLLH DDLTGHVFAW
SLLQAADRGV RVRLLLDDMD TGGYDAATAA LDAHENVEIR LFNPFWRDQN LLAAGLTDFK
RINRRMHNKS MTADNAMSIV GGRNIGDEYF LAKRDMNYSD IDVLVAGPVV DAVSTNFDAY
WNSRFAVPAR AVIGAPKDMS LDAARDRLDA LIGDARELEY ASVIRRARAQ NFTASTLALE
WVPARMYSDP PSKAAGANDD GEILASQLAK YFAAAKSDVQ IISAYFVPRD RGSAWLAELE
DKGVEVSVVT NSLASNDVKP VYAHYAKDRR RLLESGVSLY ELRPDADRAQ RRGVNWGQSQ
SGLHAKAFTI DDRYLFVGSF NWDPRSVNIN TEMGILIDSP TFTANASEAL SEALEAEAFA
VRLEEDNRIS WTETDPDGTQ RIYYHEPTGS PWDHFVAGLY ALLPIGSQL
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