| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3204 |
|---|
| Symbol | |
|---|
| ID | 5712260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3368449 |
|---|
| End bp | 3369861 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641269131 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001534538 |
|---|
| Protein GI | 159045744 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase
[COG3195] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03164] OHCU decarboxylase
[TIGR03212] putative urate catabolism protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.933502 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.3249 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACCGCT ATCCCCGAGA TTTGACAGGA TATGGCGCGA CCCCGCCGAC CGTAACATGG
CCCGGTGGGG CGAAGATCGC CGTTCAGATC GTGCTGAACT ATGAAGAGGG GGGCGAAAAC
AACATCCTCC ACGGGGATGC GGCGTCAGAG GCTTTCCTGT CCGAGATCAC GGGAGCGGCC
CCCTGGCCCG GGCAGCGTCA CTGGAACATG GAATCGATCT ATGAATACGG CGCGCGGGCC
GGGTTCTGGC GTGTGCACCG GCTTCTGAAG GACCTGCCGG TCACCGTGTA TGGCGTGGCC
ACCGCCCTGG CGCGGGCCCC GGCGCAGGTT GCCGCGATGA AGGCCAGCGG GTGGGAGATC
GCCTCGCACG GGCTGAAATG GGTCGAGCAC AAGGATATGG ACCCCGAGCA AGAGCGGGCG
CAGATCCGCG AGGCCATCCA GCTGCATACG GAAGTGACCG GCAGCGCGCC GCGCGGGTGG
TATACCGGGC GCTGTTCCAT GAACACGGTC GACCTGGCGG CCGAAGAGGC CGATTTGGCC
TATATCGCGG ACAGTTACGC CGATGATCTG CCCTACTGGA TCCGCGCGGG CGGCAAGGAC
CAGCTCATCG TGCCCTATAC GATGGATTGC AACGACATGC GCTTTGCGAT CCAGGCGGGC
TACACCAATG GCGACCAGTT CGAGAGCTAT CTCAAGGACA GTTTCGACAT GCTTTATGCC
GAAGGAGAGG CAGGGCATCC GGCGATCCTG TCCATCGGTC TGCATTGCCG CCTGATCGGG
CGGCCCGGGC GGGCCATGGC GCTGAAACGT GCGCTGGAGC ATTTCCGCAA ACACGAGGGC
GTCTGGTTCG CCACGCGCGA ACAGATCGCC GACCATTGGG CGCAGCAACA CCCCCCCGCC
GCGCAGCGAC GGCCCTCCGA GATGGATCGC GACAGCTTCG TGGCCGCGTT CGGCGGCATT
TTTGAGCACA GCCCCTGGAT CGCCGAAGGC GCCCACGCGC TGGAGCTTGG TCCGACCCAT
GACAATGCCG CCGGGGTGCA CAACGCCCTG TGCCGGATTT TCCGCGGCGC GTCCGAAGCG
CAACGGCTGA GCGTTCTGAC CGCGCACCCG GATCTTGCGG GCAAACTGGC GGCGGCGGGC
AAGCTCACCG CGGAAAGCAC GGCGGAACAG GCGGGCGCGG GGCTCGACCT GCTGACCGAC
GCGGAGCGCG CGACATTCCA GAAGCTCAAC GCGCAGTACG TGGCGCGGCA CGGGTTTCCC
TTCATCATCG CGGTCAAGGA CAACACCAAG GCCACGATCC TCGACGCGTT CCACCGCCGT
ATCGAAAACG ACCGGGAGAC CGAGTTCGCT GAGGCCTGCC GCCAGGTGGA GCGTATCGCG
GAACTGCGCC TGATCGAGAA GCTGGGCGCA TGA
|
|---|
| Protein sequence | MNRYPRDLTG YGATPPTVTW PGGAKIAVQI VLNYEEGGEN NILHGDAASE AFLSEITGAA
PWPGQRHWNM ESIYEYGARA GFWRVHRLLK DLPVTVYGVA TALARAPAQV AAMKASGWEI
ASHGLKWVEH KDMDPEQERA QIREAIQLHT EVTGSAPRGW YTGRCSMNTV DLAAEEADLA
YIADSYADDL PYWIRAGGKD QLIVPYTMDC NDMRFAIQAG YTNGDQFESY LKDSFDMLYA
EGEAGHPAIL SIGLHCRLIG RPGRAMALKR ALEHFRKHEG VWFATREQIA DHWAQQHPPA
AQRRPSEMDR DSFVAAFGGI FEHSPWIAEG AHALELGPTH DNAAGVHNAL CRIFRGASEA
QRLSVLTAHP DLAGKLAAAG KLTAESTAEQ AGAGLDLLTD AERATFQKLN AQYVARHGFP
FIIAVKDNTK ATILDAFHRR IENDRETEFA EACRQVERIA ELRLIEKLGA
|
|---|
| |