Gene Dshi_3201 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3201 
Symbol 
ID5712257 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3366067 
End bp3366408 
Gene Length342 bp 
Protein Length113 aa 
Translation table11 
GC content63% 
IMG OID641269128 
Productputative endoribonuclease L-PSP family protein 
Protein accessionYP_001534535 
Protein GI159045741 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0251] Putative translation initiation inhibitor, yjgF family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.0954576 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.771156 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGAAC GCATCGAAAC CGGGGAACGG TCCTCGAAGA TCGTCAAGCA CAATGGCGTG 
GCCTACCTGA CCGGGCAGGT CGCGGAGGGC GAGACCGTTC AGGAGCAGGT CCGCCTCTGC
CTCGAGAAGA TCGACGCCCT TCTGGAAAAG GCCGGATCGT CGCGCGAGAA CATGCTGCGT
GTCACGATCT GGCTGGCCGA CATGAAGGAT TTCGCCGGTC TGAACGAGGT GTGGAACGCC
TGGGTTCCGA CGGGCCATGC GCCGGCCCGC GCCTGTGGTG AGGCAAAGCT CGCGCGGCCC
GAACTGAAAG TCGAATTCAT CGTGGACGCG GCTTACGACT GA
 
Protein sequence
MIERIETGER SSKIVKHNGV AYLTGQVAEG ETVQEQVRLC LEKIDALLEK AGSSRENMLR 
VTIWLADMKD FAGLNEVWNA WVPTGHAPAR ACGEAKLARP ELKVEFIVDA AYD