Gene Dshi_3190 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3190 
SymbolhemA3 
ID5712246 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3353217 
End bp3354440 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content65% 
IMG OID641269117 
Product5-aminolevulinate synthase 
Protein accessionYP_001534524 
Protein GI159045730 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0156] 7-keto-8-aminopelargonate synthetase and related enzymes 
TIGRFAM ID[TIGR00858] 8-amino-7-oxononanoate synthase
[TIGR01821] 5-aminolevulinic acid synthase 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGATCG ACCGCTATAT CGCCGACCGG CTCGCCCAAC TTCGCGAAGA AGGCAATTAT 
CGGGTCTTTG CCGATCTCGA GCGTCACCGG GGGGCGTTTC CCCGCGCCAC GCGCCGCAGC
GGTTCGGGCA GTGGTCCTGT CACCATCTGG TGTTCGAACG ACTATCTCGG CATGGGCCAG
CACCCCGATG TCCTAGCCGC GATGCACGGC GCGCTTGATC GGTCCGGCGC AGGCGCGGGC
GGGACGCGCA ATATCTCGGG CACGACCCAT GACCATGTCG CGCTCGAAGC CGAGTTGGCG
GACCTCCACG GCAAGGAGGC GGCGCTTCTG TTCACCTCGG GCTACGTTTC GAACTGGGCC
GCGCTGGGCA CCCTGGGCGC GATGTTGCCC GATTGTCTGA TTCTCTCCGA TGCGCTGAAC
CATGCCTCGA TGATCGAGGG CATCCGCCAT TCCCGCGCCG ACCGGGTCAT CTGGACCCAT
AACGACATGG CCGACCTGGA GGCCAAGCTG GCGGCCCAAC CTCTTGAGCG GCCCAAGATC
ATCGCCTTCG AAAGCGTCTA TTCCATGGAT GGGGACATCG CCCCGATCGC CGAGATCTGC
GACCTGGCCG ACCGCTACAA TGCCATGACC TATCTCGACG AGGTGCACGC GGTGGGTCTC
TATGGTCCGC GGGGCGGTGG GGTGGCCGAG CGCGAAGGGC TGATGGAGCG CATCACGGTG
ATCGAGGGTA CGCTGGGCAA GGCCTTTGGC GTGGTCGGCG GCTATATCGC GGCGAGCGCG
GACCTGTGCG ATTTCGTGCG GTCCTTTGCG TCGGGTTTCA TCTTCACCAC CGCTCTGCCG
CCCCATGTGG CGGCCGGGGC CTGCGCCTCT GTTCGGCATC TCAAGCAGAG CAGTATCGAG
CGACGCATCC AGCAAGAGCG CGTGGCCGAG TTGCGTGCCC GGTTCGATGC GATCGGCCTG
CCCCATGTGC CGAACCCCAG CCACATCATT CCGCTGATGG TGGGCGACCC GGTGAAGTGC
AAGTTCATCT CGGACACGCT GCTGGACGAG TTCGGCATCT ATATCCAGCC GATCAATTAC
CCGACCGTGC CCAAGGGGAC CGAGCGGTTG CGCATCACCC CGTCGCCGGT CCACGACCCG
GCGGATCTCG ACCGTTTGTG CACTGCGCTC GAAACGCTCT GGACCCGGTG CCAGCTCGCC
CGGATGCCCC GCGCGGCCCA GTAG
 
Protein sequence
MQIDRYIADR LAQLREEGNY RVFADLERHR GAFPRATRRS GSGSGPVTIW CSNDYLGMGQ 
HPDVLAAMHG ALDRSGAGAG GTRNISGTTH DHVALEAELA DLHGKEAALL FTSGYVSNWA
ALGTLGAMLP DCLILSDALN HASMIEGIRH SRADRVIWTH NDMADLEAKL AAQPLERPKI
IAFESVYSMD GDIAPIAEIC DLADRYNAMT YLDEVHAVGL YGPRGGGVAE REGLMERITV
IEGTLGKAFG VVGGYIAASA DLCDFVRSFA SGFIFTTALP PHVAAGACAS VRHLKQSSIE
RRIQQERVAE LRARFDAIGL PHVPNPSHII PLMVGDPVKC KFISDTLLDE FGIYIQPINY
PTVPKGTERL RITPSPVHDP ADLDRLCTAL ETLWTRCQLA RMPRAAQ