| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3179 |
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| Symbol | nirE |
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| ID | 5712235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3340889 |
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| End bp | 3341683 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641269106 |
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| Product | uroporphyrinogen-III C-methyltransferase |
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| Protein accession | YP_001534513 |
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| Protein GI | 159045719 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0007] Uroporphyrinogen-III methylase |
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| TIGRFAM ID | [TIGR01469] uroporphyrin-III C-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.525633 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.911093 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGACCCT TTGGAAAAGT CAGCCTCGTC GGCGCGGGTC CCGGAGATCC GGAATTTCTG
ACCCTGCGCG CCCTGCGCCT GATCCTCGAC GCCGAAGTCA TCGTTCACGA CCGGCTCGTC
CCCAGCGAGA TCGTCAATCT CGCCAAGAAA GGCACGCGGC TGATCTCTGT CGGCAAACGC
GCAGGCTTCC ATCCGGTGCC GCAATCCGAA ATCAACGACA TGCTCGTGGA CATCGCCATG
ACCGGCCAGG ACGTGGTCCG CCTGAAGGGT GGGGACCCGT TCATCTTCGG GCGGGGCTCG
GAAGAAGCCG CCGAGTTGCG GGCCCATGGC ATCCGCGTGG AAATCGTGCC CGGCATCACC
GCCGCGCAAG GCACCGCGGC CTCGACCGGT GTGCCCCTGA CCCATCGCGG CCTGGCCACC
GGCGTGCGCT ACGTGACCGG CCATCGCAAG GCGGATGAAC CGCTGGACCT GGACTGGGCG
AGCCTGGCCG ATCTCGACAC CACCCTCGTG GTCTACATGG GCGGCGCCAA TATCGCCGAG
ATCTCCCGCA ACCTGATTGG CCAAGGCCTG CCCGTGGACT TGCCCGTGCT GGCCGTGTCC
CGCGCCACCA CCCCGGGCGA GCAGCGCTGC CTGACCAACC TCAGCCGTGT CGCCACCGAC
GTGGAAGCCC GCGTCTTTCC CAGCCCGGTC CTGTTTGTCA TCGGGCGCGT CGTCGAATTG
GCGACCGATG TCGGCGCCGT GATGCCCGAA GCCGTCGGGC GCGTGAACGA CAAGGTGAAG
GTGCTCCATG TCTAG
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| Protein sequence | MRPFGKVSLV GAGPGDPEFL TLRALRLILD AEVIVHDRLV PSEIVNLAKK GTRLISVGKR
AGFHPVPQSE INDMLVDIAM TGQDVVRLKG GDPFIFGRGS EEAAELRAHG IRVEIVPGIT
AAQGTAASTG VPLTHRGLAT GVRYVTGHRK ADEPLDLDWA SLADLDTTLV VYMGGANIAE
ISRNLIGQGL PVDLPVLAVS RATTPGEQRC LTNLSRVATD VEARVFPSPV LFVIGRVVEL
ATDVGAVMPE AVGRVNDKVK VLHV
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