Gene Dshi_3174 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3174 
SymbolnirH 
ID5712230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3337486 
End bp3337971 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content67% 
IMG OID641269101 
Productputative nitrite reductase heme biosynthesis H protein 
Protein accessionYP_001534508 
Protein GI159045714 
COG category[K] Transcription 
COG ID[COG1522] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones49 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.827846 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATGG ATCATATCGA CCGAGCGCTC ATCGCCGAAA CCCAGGCCGG GTTGCCCCTG 
GTGGCCGAGC CCTATGCCGC CGTGGCCGAG GCGCTCGGGA TGCCCGAGGA CCAGGTCATG
GCGCGCCTGC GCAGCCTAAA GGCTCGCGGG ATCATGCGCC GGATCGCCAT CGCGCCCAAC
CACTACAAGC TGGGCATGAC CGCAAATGGC ATGACCGTCT GGGACGTGCG CGATGCGGAT
GTGGCCGAGC TGGGTGCCCG GATCGGCGCG CTCGGCTTTG TCTCCCATTG CTACGAGCGG
CCCCGCGCGC TGCCGGACTG GCCCTACAAC CTCTTCGCGA TGGTCCATGG CGACACCAGA
GACGAGGTCG AGGCCAAGCG CGCCGAGATC GCCACCCTGC TGGGAGCGGC CTGCCGGGCG
TCGGACGTCC TCTATTCCAA GCGCATCCTG AAAAAGACCG GCCTGCGGCT GGCAAAGGGG
AAATGA
 
Protein sequence
MKMDHIDRAL IAETQAGLPL VAEPYAAVAE ALGMPEDQVM ARLRSLKARG IMRRIAIAPN 
HYKLGMTANG MTVWDVRDAD VAELGARIGA LGFVSHCYER PRALPDWPYN LFAMVHGDTR
DEVEAKRAEI ATLLGAACRA SDVLYSKRIL KKTGLRLAKG K