Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3173 |
Symbol | nirJ |
ID | 5712229 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 3336270 |
End bp | 3337484 |
Gene Length | 1215 bp |
Protein Length | 404 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641269100 |
Product | putative nitrite reductase heme biosynthesis J protein |
Protein accession | YP_001534507 |
Protein GI | 159045713 |
COG category | [R] General function prediction only |
COG ID | [COG0535] Predicted Fe-S oxidoreductases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.992211 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCCGGC TGAGCCATTA TCTCGACCAG CTCTATCATC CGACCCCGCC GCGTATCGCC AGGGGCACGC CAAAGCCGGT CGTGATCTGG AACCTGACGC GGCGCTGCAA TCTCAAGTGC AAGCATTGCT ACACGGTCTC GGCGGATGTG GATTTCCCGG GCGAGCTGAC GGCGGCCCAG GCCCGCGAAA CGCTGGAGGA TATCGGACGC TTCAAGGTGC CCGCGCTGAT CCTGTCCGGG GGCGAGCCCT TGCTGCGCGA TGACCTCTTC GCGCTGGCCA AACGCGCGCG GGCGTTGACC CGCGTGCTGG CCCTGTCCAC CAACGGTACC GGCGTGATCG GGTCCAAGGC CGACCGCGTG GCGGAGATCG GGTTCGACTA TGTCGGCATC TCGATCGACG GGATCGGCGC CACCAACGAC GCTTTCCGCG GCGTGATCGG TGCCTATGAA CAGGCGCTGG CCGGCGTGCG TTCGTGCAAG CGGCGCGGGA TCAAGGTGGG CCTGCGCTTC ACCATCACCG AACAGAATGA GAGCCAGCTG CCCGAGCTTC TGAAGCTCTG CGATGACGAG GGGGTGGACA AGTTCTACCT GTCGCACCTG GTCTATGCCG GGCGCGGCAA CAAGAACCGG GGCGAGGATG CCGACCATGC CCGCACCCGC CGCGCCATGG ACCTGCTGAT CGCACGCGCG CTGGAAAGTG CCGAGGGCAG GGGCCATCCG CTGGAAATCG TGACCGGCAA CAACGATGCC GACGCGGTCT ATTTCCTGAA CTGGGCAAAA GCCAATTTCC CCGCCGCGCA AGTGGCCCAT CTGCGCAAGC ACCTGGAGGC CTGGGGCGGA AATGCCTCGG GCGTGGGGGT TGCCAATATC GACACCCAGG GCGACGTGCA CCCTGACACC TACTGGTCCG AATACACCGT CGGCAGTGTC AAGCAGACCC CGTTTTCCGA GCTCTGGACC GGGCCCGACC CGATGCTGGC CGAGCTGCGC CGCCGTCCGC GGCCGCTAAA GGGCCGGTGC GGAGCCTGTG CCCACCAGGC GGTCTGCGGC GGCAACACGC GCATTCGCGC GCTTCAGCTG ACCGGCGACC CCTGGGCCGA AGACCCTGCC TGCTATCTCA CCGCGGCCGA AACCGGCACT GCAACGGATA TCGACCGCCT GACCGTCAGA CCTTTCATCG GAGACCGACA TGACCCCAAG CCGGCTTTTG TCTAG
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Protein sequence | MFRLSHYLDQ LYHPTPPRIA RGTPKPVVIW NLTRRCNLKC KHCYTVSADV DFPGELTAAQ ARETLEDIGR FKVPALILSG GEPLLRDDLF ALAKRARALT RVLALSTNGT GVIGSKADRV AEIGFDYVGI SIDGIGATND AFRGVIGAYE QALAGVRSCK RRGIKVGLRF TITEQNESQL PELLKLCDDE GVDKFYLSHL VYAGRGNKNR GEDADHARTR RAMDLLIARA LESAEGRGHP LEIVTGNNDA DAVYFLNWAK ANFPAAQVAH LRKHLEAWGG NASGVGVANI DTQGDVHPDT YWSEYTVGSV KQTPFSELWT GPDPMLAELR RRPRPLKGRC GACAHQAVCG GNTRIRALQL TGDPWAEDPA CYLTAAETGT ATDIDRLTVR PFIGDRHDPK PAFV
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