| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3165 |
|---|
| Symbol | napA |
|---|
| ID | 5712221 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3328696 |
|---|
| End bp | 3331191 |
|---|
| Gene Length | 2496 bp |
|---|
| Protein Length | 831 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641269092 |
|---|
| Product | nitrate reductase catalytic subunit |
|---|
| Protein accession | YP_001534499 |
|---|
| Protein GI | 159045705 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01706] periplasmic nitrate reductase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCT CTGACTCTCG CCGGACATTC CTTAAGGCCA GCGCCGCGGC TGCGACCGCT
TCCGCTGCGG GGATCCCGCT GGCCAATGGC ACCGCCGCCG AAGCCCAGGC CATCTCGACG
GGCATCCGCT GGGACAAGGC AGCCTGCCGG TTCTGCGGCA CCGGCTGCTC GGTGCTGGTG
GGCACCAAGG AAGGCCGCGT GGTCGCTACC CAAGGTGACC CGGACGCCCC GGTGAACCGC
GGGTTGAACT GCATCAAGGG CTATTTCCTG TCCAAGATCA TGTACGGCGA AGACCGCCTG
ACGATGCCCC TGCTGCGCAA GACCAATGGC GTCTACGACA AGAACGGCAC GTTCGAGCCG
GTGTCCTGGG ACGAGGCCTT CGACGTGATG GCGCAGAAGT GGAAAGAAGC GCTGGCCAAG
AAGGGGCCGA CCAGTGTCGG CATGTTCGGC TCGGGCCAGT GGACCGTCTG GGAAGGCTAT
GCCGCCGCCA AGCTGATGAA GGCCGGTTTC CGCTCCAACA ACATCGATCC GAACGCGCGG
CACTGCATGG CCTCCGCCGT GGTCGGCTTC ATGCGCACCT TCGGCATCGA CGAGCCGATG
GGCTGCTACG ATGACTTCGA GCATGCGGAT ACCTTTGTGC TCTGGGGCTC CAACATGGCC
GAGATGCACC CGATCCTCTG GTCGCGCCTC ACCGACACCC GCCTGACCAA GCCGGGCTCC
GAGGTGCATG TGCTGTCCAC CTACGAGCAC CGCTCGTTCG AGCTTGCCGA TAACGGCATG
GTGTTCGCGC CGCAGACCGA TCTCGCGATC CTGAACTACA TCGCGAACTA CATCATTTCG
ACCGGGCGCG TGAACGAGGA CTTCATGTCC AAGCACGTCA ACATCACCAA GACCGCGACG
GATATCGGGT ACGGCTTGCG GGATGAACAC GCCCTGCAAC AGGAAGCGGA GAATCCCAAT
TCCGGCAAGC TGGAACCGAT CAGCTTCGAC GAGTACGCCG CCAGCGTCGC CGAATACACG
GTCGACAAGG TTTCCGAGCT TTCGGGCGTG CCCGCCGCGC AGCTGGAGAA GCTGGCCGAG
CAATACGCCG ACCCCAACCG CAAGGTGATG AGCCTTTGGA CCATGGGCTT CAACCAGCAC
ACTCGCGGCT CCTGGGTCAA CTCGCTGATG TACAACGTGC ATCTCTTGGT GGGCAAAATC
TCCGAGCCGG GCAATTCGCC CTTCTCGCTG ACCGGGCAGC CCTCGGCCTG CGGCACCGCC
CGCGAGGTCG GCACCTTTGC CCATCGCCTG CCTGCGGACA TGGTCGTGAT GAACGACGCG
CACCGCGCCC TGACCGAAAA GAAGTGGAAC CTGCCCGAGG GGACCATCCC CGCCAAGCCC
GGCTTCCACG CCGTGTTGCA GCACCGCAAG CTCAAGGATG GCGATCTGAA CGCCTACTGG
GTGCAGTGCA ACAACAACAT GCAGGCCGCG CCGAACATGA ACGAAGAAGG CTATCCGGGC
TATCGCAACC CGGAAAACTT CATCACCGTG TCCGACCCCT ATCCGACCGT CACCACCATG
TCGGCCGACC TGATCCTGCC CACGGCCATG TGGGTTGAAA AGGAAGGCGC CTATGGCAAT
GCGGAGCGCC GGACCCAGTT CTGGCGCCAG CAGGTCAAGG CCCCGGGCGA GGCAAAATCC
GACCTCTGGC AACTGATGGA ATTCTCCAAG CGGTTCACCA TCGAAGAGGT CTGGGGCGAG
GAATTGCTCG CCAAGATGCC CGAGCATCGC GGCAAGACCA TGTACGACGT GCTCTTTGCC
AACGGCAAGG TGGACAAGTA CCCGCTGTCG GAGACCGCCG AAGGGTTCGA CAACGACGAG
TCCGAGCATT TCGGCTATTA CGTGCAGAAG GGCCTGTTCG AGGAATATGC CGGTTTCGGC
CGCGGCAAGG CCCATGACCT GGCGTCTTTC GAGACCTACC ACCAGTCGCG CGGCTTGCGT
TGGCCCGTGG TGGACGGCCA GGAAACCCTG TACCGCTTCC GCGAGGGCTA CGACCCCTAT
GTGCCCGAAG GCGAGGGCGT CCGGTTCTAT GGCCACAGCG ACGGCAAGGC GAAGATCATC
TACGCCCCCT ACGAGCCTGC GCCCGAAGTG CCGGATGCCG AGTTCGACCT GTGGCTCTGC
ACAGGCCGGG TGCTGGAGCA CTGGCATTCG GGGTCGATGA CTCGGCGTGT GCCCGAGTTG
CACCGGGCCT ATCCGGCGGC CGTGGTCTAC ATGCACCCCG AGGATGCGAA GGCGCGCGGG
TTGCGGCGCG GACAGGAGAT CAACATCTCC ACCCGGCGCG GGGACATGCT CAGCCGGGTC
GAGACCCGGG GCCGGAACAA GGTGCCGCAA GGCCTCGTGT TCGTGCCGTG GTTCGACGAG
GGCCAGCTGA TCAACCAGTT GACGCTCGAT GCGACCTGCC CGCTCTCGAA AGAGACCGAC
TTCAAGAAAT GCGCCTGCAA GGTGGAACGG GCCTGA
|
|---|
| Protein sequence | MTISDSRRTF LKASAAAATA SAAGIPLANG TAAEAQAIST GIRWDKAACR FCGTGCSVLV
GTKEGRVVAT QGDPDAPVNR GLNCIKGYFL SKIMYGEDRL TMPLLRKTNG VYDKNGTFEP
VSWDEAFDVM AQKWKEALAK KGPTSVGMFG SGQWTVWEGY AAAKLMKAGF RSNNIDPNAR
HCMASAVVGF MRTFGIDEPM GCYDDFEHAD TFVLWGSNMA EMHPILWSRL TDTRLTKPGS
EVHVLSTYEH RSFELADNGM VFAPQTDLAI LNYIANYIIS TGRVNEDFMS KHVNITKTAT
DIGYGLRDEH ALQQEAENPN SGKLEPISFD EYAASVAEYT VDKVSELSGV PAAQLEKLAE
QYADPNRKVM SLWTMGFNQH TRGSWVNSLM YNVHLLVGKI SEPGNSPFSL TGQPSACGTA
REVGTFAHRL PADMVVMNDA HRALTEKKWN LPEGTIPAKP GFHAVLQHRK LKDGDLNAYW
VQCNNNMQAA PNMNEEGYPG YRNPENFITV SDPYPTVTTM SADLILPTAM WVEKEGAYGN
AERRTQFWRQ QVKAPGEAKS DLWQLMEFSK RFTIEEVWGE ELLAKMPEHR GKTMYDVLFA
NGKVDKYPLS ETAEGFDNDE SEHFGYYVQK GLFEEYAGFG RGKAHDLASF ETYHQSRGLR
WPVVDGQETL YRFREGYDPY VPEGEGVRFY GHSDGKAKII YAPYEPAPEV PDAEFDLWLC
TGRVLEHWHS GSMTRRVPEL HRAYPAAVVY MHPEDAKARG LRRGQEINIS TRRGDMLSRV
ETRGRNKVPQ GLVFVPWFDE GQLINQLTLD ATCPLSKETD FKKCACKVER A
|
|---|
| |