| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3159 |
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| Symbol | |
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| ID | 5712215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3323968 |
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| End bp | 3325263 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641269086 |
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| Product | TRAP transporter-DctM subunit |
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| Protein accession | YP_001534493 |
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| Protein GI | 159045699 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGGGT TCTGGAGCGT TTTTCTGGGC GGATTGCTGG CCTTTGCCGG CTCGGGTCTG
GCGCTGGGGG CCGCGCTCGG CCTGACGGGG CTTCTGATCC TGCACTTCGT CGCCAACGGC
GCCACCTTCG TGGCGGTGGA CGCGGTGTGG AATGTGCTGA ATTCCTTCAC GCTGAGCGCG
ATACCGCTCT TCATCATCCT CGGCGAGATC ATGCTGCGCT CCGGCGTCAG CGCACGGATT
TATTCCGCCC TGTCGCCGGT GTTCATGCGG GTGCCGGGCG GGTTGCTGCA CACGAATGTG
GCGGTCTGTA CGCTCTTCGG GGCGGTCAGC GGATCGAGCC TGTCGACCGC CGCCGCCGTG
GGGTCGGTCG CCTATCCCGA GATGACGCGG CGGGGCTATG ATCGCCGGAC GGTGGTGGGG
TCGCTGGCGG GGGGCGGGAC GCTGGGGCTG CTGATCCCAC CGAGCCTGTC GCTGCTGATC
TTCGGGGCGC TGACGGAGAC GTCCATCGGG CAGCTGTTCC TCGCCGGGCT CGTGCCGGGG
CTGCTTTTTG CGGCGATGTT CATGGTCTAT ATCTACCTTC GCTGCCGGAT CACGCCAAGC
CTCGCCCCGG CAGAGGCCGC CCGCCCCCCG GGCCGCGAGA TCCTGCGCGG GGTGCTGGGT
CTGTGGCCCT TCCTGCTGCT GATCCTGTCG ATCATGGGCA GCATCACCCT GGGCTTTGCC
ACGCCGACCG AGGCTGCGGG GATCGGCGTG ATCGCCACCA TCATCATCGG GCGGCTGTGG
GGCACGCTGA CCCTGCGGGC GCTGGCCGAG GCGGTTTATG CCGCGATCCG GCTCTATGGT
GCCATCGCTT TCGTGGTCAT CGGGGCGACG ATCCTCGCGC AAGCGGTCAG CCTGCTTGGC
GTACCACAAG CGATCCTGGA AACGGTGCGC GCCTCGGATC TGGGCCCGCT CGCGGTTCTG
GCGGTCGTGG TGCTGGTCTA CCTGGTGCTG GGCTGCTTTT TCGATGGGCT GTCCCTGATG
ATCATGACAT TGCCCATCGT TTTCCCGCTG CTCACGGGTT TGGGGTATGA CGCTATCTGG
CTCGGGGTGA TCATCACCAT CCTGATCGAG ATCGGCCAAG TCACGCCGCC TGTGGGACTG
AACCTGTCGG TGCTGGTCTC GGTCACCAAG AACGCGGTGT CCCTGGGCGA GGCGGCGAAG
GCCACGGTGC CCTATTGGCT GATTCTGCTG GCGGGGGTGG CGATCCTGAC CGCCCTGCCG
GCGCTGGCGC TGTTCCTGCC CGGGGCGCTG ATGTAG
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| Protein sequence | MAGFWSVFLG GLLAFAGSGL ALGAALGLTG LLILHFVANG ATFVAVDAVW NVLNSFTLSA
IPLFIILGEI MLRSGVSARI YSALSPVFMR VPGGLLHTNV AVCTLFGAVS GSSLSTAAAV
GSVAYPEMTR RGYDRRTVVG SLAGGGTLGL LIPPSLSLLI FGALTETSIG QLFLAGLVPG
LLFAAMFMVY IYLRCRITPS LAPAEAARPP GREILRGVLG LWPFLLLILS IMGSITLGFA
TPTEAAGIGV IATIIIGRLW GTLTLRALAE AVYAAIRLYG AIAFVVIGAT ILAQAVSLLG
VPQAILETVR ASDLGPLAVL AVVVLVYLVL GCFFDGLSLM IMTLPIVFPL LTGLGYDAIW
LGVIITILIE IGQVTPPVGL NLSVLVSVTK NAVSLGEAAK ATVPYWLILL AGVAILTALP
ALALFLPGAL M
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