| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3155 |
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| Symbol | |
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| ID | 5712211 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3320427 |
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| End bp | 3321716 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641269082 |
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| Product | TRAP transporter- DctM subunit |
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| Protein accession | YP_001534489 |
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| Protein GI | 159045695 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTGGG CCATTTCCGC GGGGCTTCTG GGGCTGCTGG CGCTGTCGAT CCCGGTGGGG
ATCGTGCTGT TCCTGCTGGG CTTCGGGGTG GATGCGTTCT TCAGCCCCTT TCCGCTGATC
CGGGGGCTTG GCAACCTGGT CTGGTCGACC TCGAACAATG CCACTCTGAT CGCGATCCCG
TTCTTCGTGC TTCTGGGCGA GATCCTTGTA CGCTCTGGCA TCGCGACGCG GACCTATTCC
GCGCTGGACC GCTGGGTCAG CTGGCTGCCC GGCGGGCTGG TGCATGCCAA CGTGGCCACG
GCCACCATGT TCTCGGCCAC CTCCGGCTCG TCGGTCGCCA CGGCGGCCAC GGTCGCCACG
GTCGCCATGC CACAGGCGGA GAAGCTGGGG TATGACCCGC GGCTCTTTTC CGGGGCGATC
GCGGCGGGCG GCACGCTGGG CATCATGATC CCGCCATCGA TCAACCTGAT CGTTTACGGG
TTCCTGACCC AGACCTCGAT CCCGCAGCTA TTCCTTGCCG GGCTCGTGCC GGGCATCGCG
CTGGCGCTGG GGTTCATGGC GATCACGGTG GTGATCTGCC TGATCCGCCC CGAACTTGGC
GGGCTGCGCC GGACCTTTCC CTTCCCCGAG ATGCTGCGCG CGCTCTTGCA GCTGATCCCG
ATCATCCTGC TTTTCACGGT CATCATCGGC ACGATCTACA AAGGGTGGGC CACCCCGACC
GAGGCCGCCG CCGTGGGCGT GGCCGGCGCG GTGGTGATCG CGGCGCTCTT CGGCGGGGTG
AGCGTAAAGA TGTTCGCGGA CAGTATCCTC GGCACCATCA AGATCACGTC CATGATCATG
CTGGTGGTCA TCGCCGCCTC GTTCCTGAAC TTCACGCTGG CCTCGGCGGG GCTGGGACGG
GAGCTGCAAT CCCTGCTGGA CGGTCTGGGC CTCACGCCCA CCGGACTGAT CCTGGTGGTG
GTGCTGATCT ATATCGTGCT GGGTTTCTTC ATCGAGACGC TGTCGCTCAT GGTGGTGACG
ATCCCGATCA TCGTGCCGCT GGTGGTCGCA CAGGGGTTCG ATCCGATCTG GTTCGGCATC
CTGATGATCG TGCTGATCGA GATGGCCCTG ATTACGCCGC CGGTTGGTCT GAACCTCTAT
GTGGTGCAGG GGGCGCGCAA ATCCGGGAAG ATGAGCGAAG TGATGGTGGG CGCGATCCCT
TACGTGATCG CCATGCTGAT CATGGTCGGC CTGTTGATCC TGTTTCCGTC CATCGCCCTT
TATCTTCCAT CTGTGCTGAG CGGGAGCTGA
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| Protein sequence | MIWAISAGLL GLLALSIPVG IVLFLLGFGV DAFFSPFPLI RGLGNLVWST SNNATLIAIP
FFVLLGEILV RSGIATRTYS ALDRWVSWLP GGLVHANVAT ATMFSATSGS SVATAATVAT
VAMPQAEKLG YDPRLFSGAI AAGGTLGIMI PPSINLIVYG FLTQTSIPQL FLAGLVPGIA
LALGFMAITV VICLIRPELG GLRRTFPFPE MLRALLQLIP IILLFTVIIG TIYKGWATPT
EAAAVGVAGA VVIAALFGGV SVKMFADSIL GTIKITSMIM LVVIAASFLN FTLASAGLGR
ELQSLLDGLG LTPTGLILVV VLIYIVLGFF IETLSLMVVT IPIIVPLVVA QGFDPIWFGI
LMIVLIEMAL ITPPVGLNLY VVQGARKSGK MSEVMVGAIP YVIAMLIMVG LLILFPSIAL
YLPSVLSGS
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