Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3145 |
Symbol | garL |
ID | 5712201 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 3312119 |
End bp | 3312880 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641269072 |
Product | 2-dehydro-3-deoxyglucarate aldolase |
Protein accession | YP_001534479 |
Protein GI | 159045685 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3836] 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.462882 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACCGA ACAAGCTGCG AACGCTGCTG GCGCAAGACA CGCCGATCGT GAATGCCTGG CTGTCGATCC CGTCGGGATA CGTGGCCGAG GGGGCGGGGC ACCAGGGGTT CGACAGCGTG ACCGTGGACC TGCAACACGG GCTGATCGGG TTCGAGACCG CGGTCAGCAT GCTCCAGGCG ATTTCGGCCA CGGAGGCGGT GCCGCTGGTG CGGTCGCCGT CGAAGGCGCC GGAGGTGATC ATGCATCTGC TGGATGCGGG CGCCTACGGG GTGATCTGTC CAATGATCTC CACCCCGGAG GAGGCCGCGG CCTTCGTCGC GGCCTGTCGC TATCCGCCGC AGGGCAGCCG GTCTTTCGGT CCGGCACGCG GCAAGCTCTA TGGCGGGCCG GATTACTTCG AGGCGGCCAA TGCCGAGATC CTGGCCATTC CGATGATCGA GACCGCCGAG GCCGTGGACA GGATCGAGGC CATCCTCGCC GTGCCCGGTG TCGACATGAT CTATGTCGGG CCAAACGACC TGGCGCTCGA CCTGGGCGAG GGGCCGGGGG CGGAGTGGCA TCCAAGGGCC ACCACCGACG CCATTGCCCA TGTGCTGGAC CGGGCGCGCG CCGCCGGGGT GGCCACGGGT ATCTTCTGCG GCGATGGAGC CCTGTCGCGC CAGCGGCTGG CGGAGGGGTT CGACCTGGTC ACCCCGGGCA ATGATTTCAA CCTGCTGATG GGGGCCATGT CGGCCGCGAT CGCCGAAACC CGCCGACCCT GA
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Protein sequence | MRPNKLRTLL AQDTPIVNAW LSIPSGYVAE GAGHQGFDSV TVDLQHGLIG FETAVSMLQA ISATEAVPLV RSPSKAPEVI MHLLDAGAYG VICPMISTPE EAAAFVAACR YPPQGSRSFG PARGKLYGGP DYFEAANAEI LAIPMIETAE AVDRIEAILA VPGVDMIYVG PNDLALDLGE GPGAEWHPRA TTDAIAHVLD RARAAGVATG IFCGDGALSR QRLAEGFDLV TPGNDFNLLM GAMSAAIAET RRP
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