Gene Dshi_3134 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3134 
Symbol 
ID5710986 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3301023 
End bp3302168 
Gene Length1146 bp 
Protein Length381 aa 
Translation table11 
GC content67% 
IMG OID641269061 
ProductBlaR1 peptidase M56 domain protein 
Protein accessionYP_001534468 
Protein GI159045674 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG4219] Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGCGA TGACCCCCGC GATTGATCTG TTCATTGATG CGAATATCTT GCTGCTGCTG 
GCTTTCTGCC TCTGGCGCGT TGCGCAATTT TTTCTGCAGC GCACGGCCCT GCGCCACGAC
CACGGGTTCC AGGCCGGTTT GCTCAAGACG GTGCTGTTGA TCACCCTTCT GAGCCCGATT
CTCGGCCTCG GTTTCACCAG CTTGGGAAAC TATCTCGTCC CCGACACTCC GACGACGCTC
AGCGACATTG CCGTGGCGGC ATATCTCGGC GGCAGCATCG CGATGCCTGC GGTGGACTTC
GAGGCCCTGC TGAATACCCG CAGAACATTT GTGGAAACCT TCTCCGCGGG GAAGGTTTCC
TGGGCCGCAC CGCTGCTGGC GGGTTTCGCG GTGGTGAGTG TTGCGTTGAC CCTCCGGCTG
CTGCGTTCCG CCCTCTGCGT TCGGCGCACC CTGGCCGACA GCTACCTGTG GCGGCGCACC
GGGCGGGTGG ATATCCGGCT CTCGGATCGA ATCACCGTGC CCTTCGCGGC GCGCGGTTTG
CGGCGGCGGC ATGTGGTCCT GCCCACCTGC CTGCTGACCC GGCCCCGTGA CCTGCGCGTG
GTGCTCGCCC ACGAGTTCCA GCACCTGCGC GCGGGCGACG TGGAATGGGA GCTGGCGCTG
GAAGCCCTCC GTCCCCTGGT GTTCTGGAAC CCGGCCTTCA TTCTGTGGAA ACGCGCGTTC
GAGAAACTGC GCGAGCTGAG CTGCGACCAG AGGGTCCTCG CCTCCCGCTG CATCACGCCG
CACGAGTACG CGGCCTGTTT GCTGACTTTC TGCGCGCGTC GCCGGACCGG CCCCGCCCTT
GCCCGGGTGG CCTTCGTGTC AGTGGCGCCG AACACGCCCA AGCGCGTGTT GGAGCATCGC
ATCCTGTCGC TTTACCGCCT GCCCAGCTTC CGCCACACCC GGCCCATGCT GGCCGCGCTG
GCGCTGGTCC TTGCCCTGGG CATCGGCAGC ATCGCCGCCA CCGTGCGCGC CCCGGGCGAC
TGGAGCCAGG ATCGCCTGAT GCTGTCGACC ATCGTCAATC TCGAACGCCT CGACGCCATC
ACCCGGCAGC AGGGCCGCGC CACCCCGGCC AGCGGCCTGC TCGGCGTCGC CCCCATGTCC
CGCTAG
 
Protein sequence
MTAMTPAIDL FIDANILLLL AFCLWRVAQF FLQRTALRHD HGFQAGLLKT VLLITLLSPI 
LGLGFTSLGN YLVPDTPTTL SDIAVAAYLG GSIAMPAVDF EALLNTRRTF VETFSAGKVS
WAAPLLAGFA VVSVALTLRL LRSALCVRRT LADSYLWRRT GRVDIRLSDR ITVPFAARGL
RRRHVVLPTC LLTRPRDLRV VLAHEFQHLR AGDVEWELAL EALRPLVFWN PAFILWKRAF
EKLRELSCDQ RVLASRCITP HEYAACLLTF CARRRTGPAL ARVAFVSVAP NTPKRVLEHR
ILSLYRLPSF RHTRPMLAAL ALVLALGIGS IAATVRAPGD WSQDRLMLST IVNLERLDAI
TRQQGRATPA SGLLGVAPMS R