| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3091 |
|---|
| Symbol | pyrB |
|---|
| ID | 5710943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3260134 |
|---|
| End bp | 3261084 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641269018 |
|---|
| Product | aspartate carbamoyltransferase catalytic subunit |
|---|
| Protein accession | YP_001534425 |
|---|
| Protein GI | 159045631 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0540] Aspartate carbamoyltransferase, catalytic chain |
|---|
| TIGRFAM ID | [TIGR00670] aspartate carbamoyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0559987 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACTCC GCGCGCGTCA TCTTCTGGGG ATCGAACACC TGGCCCCGGA CGAGATCGTC
ACGCTGCTGG ACCTCGCGGA TCGCTACGCA GACCTGAACC GACGCCCGGA CAAGCATGGC
GACGCGCTGG ACGGGCTCAC CCAGATCAAC ATGTTCTTCG AAAACTCCAC CCGCACCCAG
GCCAGTTTCG AGATCGCGGG CAAGCGGCTC GGCGCGGACG TGATGAACAT GGAAGTGCGC
GCCAGCTCGA TCAAGAAGGG CGAGACCCTG ATCGACACGG CGATGACCCT GAACGCCATG
CACCCGGATC TGCTGGTCGT CCGACATCCC CATTCCGGGG CGGTCAACCT CCTGGCGGAA
AAGGTGAATT GCGCGGTTCT GAACGCAGGC GATGGGCGGC ATGAGCATCC GACGCAAGCC
CTGCTCGATG CGCTGACGAT CCGGCGCGCC AAGGGCAAGC TGCACCGGCT CAACGTTGCG
ATCTGCGGCG ACATCGCCCA TTCCCGGGTC GCGCGCTCCA ACATCCTGCT GCTGGGCAAG
ATGGAGAACC GCATCCGCCT CGTGGGGCCG CGGACCCTGA TGCCCGCCGA GATCGCCGAG
CTTGGCGTCG AGGTGTACGA GGACATGAAG GCCGGGCTGG ACGGGGTCGA CGTGGTGATG
ATGCTGCGGC TCCAGAAGGA GCGGATGGAT GGCGGTTTCA TCCCGTCGGA GCGCGAATAT
TACCACCGCT ACGGGCTGGA TGCCGAGAAG CTCGCCTATG CCAAGCCCGA CGCCATCGTC
ATGCATCCCG GCCCGATGAA TCGCGGGGTC GAGATCGACG GCACCCTGGC CGACGACATC
AACCGCTCCG TCATCCAGGA GCAGGTCGAG ATGGGCGTGG CCGTGCGCAT GGCGGCGATG
GACCTGCTGG CGCGCAACCT GCGCGCCGCA CGAGAAGGAG TTCGCGCATG A
|
|---|
| Protein sequence | MTLRARHLLG IEHLAPDEIV TLLDLADRYA DLNRRPDKHG DALDGLTQIN MFFENSTRTQ
ASFEIAGKRL GADVMNMEVR ASSIKKGETL IDTAMTLNAM HPDLLVVRHP HSGAVNLLAE
KVNCAVLNAG DGRHEHPTQA LLDALTIRRA KGKLHRLNVA ICGDIAHSRV ARSNILLLGK
MENRIRLVGP RTLMPAEIAE LGVEVYEDMK AGLDGVDVVM MLRLQKERMD GGFIPSEREY
YHRYGLDAEK LAYAKPDAIV MHPGPMNRGV EIDGTLADDI NRSVIQEQVE MGVAVRMAAM
DLLARNLRAA REGVRA
|
|---|
| |