Gene Dshi_3086 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3086 
Symbol 
ID5710938 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3256765 
End bp3257814 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content70% 
IMG OID641269013 
Productmetallo-beta-lactamase family protein 
Protein accessionYP_001534420 
Protein GI159045626 
COG category[R] General function prediction only 
COG ID[COG0491] Zn-dependent hydrolases, including glyoxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.825394 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATGC CCTTCGGCCC CCTGCGGACC CCGTTCGAGA CCGCGCCGGA CACGGGCACC 
GCGACCGAGA TCGCCCAAGG CGTGCTCTGG ATGCGCCTGC CCCTGCCCAT GGTGCTGAAC
CATGTGAATG TCTACGCGCT GGATGACGGG GACAGCTGGA CGCTGGTGGA CACAGGGCTT
TACAGCCGCA AGAGCCGCGC GCTCTGGGAC GACCTGCTGG CCGGGCCACT GGCGGGCAAG
CCCGTGCGCC GGGTGATCGT CACCCACCAC CACCCGGACC ACATGGGCTG CGCCGGCTGG
TTCCAGTCCG ACCACGGGGC CGAGCTGATC ACCACCCGCA CGGCCTGGCT CATGGCGCGG
ATGCTGCAAC TGGATGCCCA GGACCGGCCC ACGCCCGAAA CCCTGACCTT CTGGCGCCGG
GCCGGGATGG ACCCCGAGAT CCTTGCAAGG CGCGCGGCCG AGCGGCCGTT CAACTTCGCC
GATACCGTGG CCCCCATGCC ACTCGGCTTT ACCCGCATCC GGGAGGGCGA CACCGTCACA
GCCGGGAGCC GCCGCTGGCA CGTCCGGATC GGCCATGGCC ACGCGCCCGA ACACGCAACT
CTGTGGAGCG CGGATTGCAA CCTCGTGCTG GGCGGCGACC AGCTGCTATC GACGATTTCC
CCCAATATCG GGGTTTACGC CACCGAGCCC GAGGCGGACC CCCTGTCCGG CTGGCTCGAC
AGTTGCACCC GTCTCGCGAC CCACGCCACC GAGGATCACC TGGTTCTGCC CGGTCACAAG
CTGCCGTTCA CCGGTCTGCC CAAGCGGCTC GACCAGCTGA TCGACAACCA CCACCAGGCG
CTGGCCCGGC TGCAAGCGTT TCTGGCCGAA GCGCCGCGTA CCGCGCCCGA CTGCTTCGGC
CTGCTGTTCA AGCGGACGAT CACCGGCGAC ACCTACGGCC TCGCGCTGGT CGAAGCGGTG
GCGCATCTCA ACCACTTGCA CGCCACCGGG CGGGCGCGCT GGACCGAGCG GCCGGATGGC
GTGCGCCTGT GGCACGCTGT CGCGGACTGA
 
Protein sequence
MNMPFGPLRT PFETAPDTGT ATEIAQGVLW MRLPLPMVLN HVNVYALDDG DSWTLVDTGL 
YSRKSRALWD DLLAGPLAGK PVRRVIVTHH HPDHMGCAGW FQSDHGAELI TTRTAWLMAR
MLQLDAQDRP TPETLTFWRR AGMDPEILAR RAAERPFNFA DTVAPMPLGF TRIREGDTVT
AGSRRWHVRI GHGHAPEHAT LWSADCNLVL GGDQLLSTIS PNIGVYATEP EADPLSGWLD
SCTRLATHAT EDHLVLPGHK LPFTGLPKRL DQLIDNHHQA LARLQAFLAE APRTAPDCFG
LLFKRTITGD TYGLALVEAV AHLNHLHATG RARWTERPDG VRLWHAVAD