Gene Dshi_3081 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3081 
Symbol 
ID5710933 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3248865 
End bp3252272 
Gene Length3408 bp 
Protein Length1135 aa 
Translation table11 
GC content69% 
IMG OID641269008 
Productefflux transporter 
Protein accessionYP_001534415 
Protein GI159045621 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00863053 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCGCTC TGGGCGGAAT TCTCACCTAT TTCACCCGGC ACCGGACGGC GGCGAACCTG 
CTGCTGCTGA TGCTGCTGGC CATCGGCTTC GCAGTGATCC CCCAGATGCG GACCCAGTTC
TTTCCGGACG TGGTGGTCGA CGACATCACC GTGCAGGTCA GCTGGGACGG CGCCGGGGCC
GAGGATGTGG ACCGCGCCAT CGTGTCCCTG CTGGAGCCTG CCCTGCAGGC GGTCGAGGGC
GTGACCGAAA GCGACGCCAC CGCCCGCGAA GGTAGCGCAA GGATTTCGGT GGAGTTCGAG
CCCGGCTGGG ACATGAGCCG CGCCACCGAC GATGTGCGCG CCGCCATGGA TGCGATCACC
GACCTGCCCG AAGACGCCGA GGAGCCGGTG ATCCGGCGCA ACAACTGGCG CGACCGGATC
ACCGACGTGG TGGTGCACGG CCCCGTGGGT GTGGACCAGT TGGCGCGGTT CTCAGACGAA
TTCGTCGCCC GCCTTTTCGA GGCCGGGGTG ACCCGCACCA CGATCCGCGG CATCGCCGCC
CCCGAGACCC TGGTGGAGGT CGCCACGCTC GACCTGATCC GCCACGACCT GACCCTGCGC
GAGATCGCCG ACGTGATCGC GGGCGCGGTG GACAGCGCCC CTTCCGGCGA CATCGCCGGG
GGCAGCGCCC GGGTGCGCAC CGGCACCGAG ACCCGCAGCG CCGAGGACCT CGCCGCCCTG
CCCCTGCGCA CGGATGCGGA CGGCAACGTG CTGACCGTGG GCGATGTGGC GACGATCTTC
GTCGGCGGCG TGGACCGGGA CCGGGCCTAT TTCGTCGGCG CGAATCCGGC CATCTCGGTC
CGCGTCGACC GCTCCGAGGA GGGCGACGCG ATCGCCATCC AGGCCCAGGT GGCCGAGGTC
GCCGAAGCGC TGGAACGGGA CCTGCCCGCA GGGGTCCGGA TCGAGCTGAT CCGCACCCGG
GCGGAGCAAA TTTCCAGCCG CCTGAACATC CTGGTGGATA ACGGGCTGCT GGGCCTCGCA
CTTGTTGTGG GTCTGCTGTT CCTGTTTCTG AACGCGCGCA CCGCCTTCTG GGTTGCCGCC
GGCATCCCGG TTGCGATGAT GGCGGCGATG TCGCTGATGT ATCTCGGCGG GCTCACCCTG
AACATGGTGT CGCTCTTTGC GCTGATCATC ACCTTGGGGA TCGTGGTCGA TGACGCCATC
GTCGTGGGCG AGCATGCCGA TTACCGCGCG CGGTACATGG GCGAGGACGG CCCGACCGCC
GCCGCCAATG CCGCCATCCG CATGGCGCCC CCGGTCTTCA CGGCCACGAT CACCACGGTC
ATCGCGTTCT TCGGTCTGAC GGCCATCGGC GGGAGTTTCG GCAACCTGAT CTATGCGATT
CCCTTCACGG TGATCGCGGT GCTGCTGGCC AGCCTGGTGG AGTGTTTCCT GATCCTGCCG
AACCACATGG CCCATGCGCT GGCCCATTCC GCCAGGGAAC ACTGGTACGA CTGGCCCTCG
CGCCAGGTGA ACCGGGGCCT TGACTGGGTG AAACGGGTGC TGTTCCGCCG CCTGATCGCC
TTCTGCATCG CTGCGCGCTA CCCGGTCTTT GCCGGGGCCA TCGTGCTGCT CCTGGCGCAG
GCGGCGCTGT TCGTGCGGGG CGACGTGACA TGGCGCTTCT TCAACGCGCC CGAGCGCGGC
TCGATCACCG GCAATTTCGC CATGCTGCCC GGCGCGACCC GCGAAGACAC GTTCGAGGCC
ATGCGCCTGA TCCAGCAAGG CACGGACGAG GTTGCCGCCC GCTACGAGGC CGAGCATGGG
CTCAATCCGC TGGCCTTCGT GCTGACCGAG GTGGGCGGCA CCACCGGGCG CGGCCTTGCC
GGCGCCGACA GCAAGGATAC CGATCAGCTG GGCTCCATCG CCATCGACCT GATCGACGCC
GACCTGCGCC CCTATTCGTC CTTCACCTTC CTTGCGGACC TGCAGGACGC CGTCCCGCGC
CACCCGATGC TGGAGACCCT GAGCTTCCGC GGCTGGCGTT CCGGTCCGGG CGGCGATGCG
CTCTCGGTGG AGTTCTACGG CGCGGATACA GAAACGCTCA AGGCCGCCGC CGAGGCGCTC
AAGACCCGGC TCGCGATCTA CCCGGAGGTC TCGGCGCTGG AGGACAGCCT GGCCTATGAC
AAGCAAGAGC TGATCCTCGA TCTGACCCCC ACGGGCAGCC AGCTGGGCTT CGACATCGAC
GCGCTGGGGC GCGAGTTGCG CGCGCGGCTC AACGGGATCG AGGCGGCGAC CTATCCCGTG
GGCACCCGCA CCGGCGCAAT CCGGGTGGAA CTGCCCGCCG CCGAGATCGG CCCGGATTTC
CTCGACCGGA TGCTGCTGCG CACCCCCTCG GGCGCCTATG TGCCCCTGGC CGATATCGTC
TCGGTCCGCA GCCAGGAGGG GTTCTCCCGC ATCCAGCGCG AGAACGGGCT TCGGGTGGTC
TCGGTGACCG GCGACATCTC GGAGGACGAC CCGGTCCGGG CCGCCGAGAT CAACACCCTG
CTGATCGAAG AGCACCTGCC CCGCATCCAG GAAGAATTCG GCGTCAACTA CGTTCAGACC
GGCCTCGCGG AGCAGGAGCG CGCCTTCCTG ACCGACGCCA CCATCGGCTT CCTGCTCTGC
CTCGTGGGGA TCTACCTGTG CCTGGCCTGG ATCTTCTCCA GCTGGACGCG GCCCGCTGTG
GTGATGGTGG TGATCCCGTT CGGGTTGATC GGGGCGATCT GGGGGCATTA CGTCTGGGAC
GTGCCGCTGT CGATGTTCTC GGTGGTGGGC CTGATCGGCA TGGCGGGGAT CATCATCAAC
GATTCCATCG TGCTGGTGAG CACGATCGAC GAATACGGCA AGGAGCGGGG CCTCGTCCCC
GCCATCATCG ACGGGACGGT GGACCGGCTG CGGCCCGTGT TGCTGACCAC CCTGACCACG
GTGCTCGGCC TCACGCCGCT GCTCTACGAA GGCTCGCAGC AGGCGCAGTT CCTCAAGCCC
ACGGTGATCA CGCTGGTCTA CGGATTGGGG TTCGGGATGG TGCTGGTGCT GATCCTCGTG
CCCGCCTTCA TGGCGATGCA GCAGGATATC GGCCGGCAAC TGGCCGCCCT GCGCCGGGCG
CTCGGCGCGC CGCTGCGCGC CGGGGGCGCC GGGCGCGCGG CCATCCTGGC CACGGCCCTC
TGCGCCGGCT GGGCCGCAGC CACCTTCGGG GTGTCCGCCG TCACCGGAGC TCTGCCTGCC
CCGCTGGCGG ACATGCTGCC CGCGGGCCTC TCGGCGCCCA TGGCCACCTT CGTCGCCTTC
CTGGGCGGGG TCTGTGCCAT CGCGCTTGCA ACCTGGTTGC TCAGCGCGCT GATCCTGGGC
TTGCGGGGTC GCGCCCGTCT GAGGGGCGAG ACGCGTCCAA CCGCTTGA
 
Protein sequence
MGALGGILTY FTRHRTAANL LLLMLLAIGF AVIPQMRTQF FPDVVVDDIT VQVSWDGAGA 
EDVDRAIVSL LEPALQAVEG VTESDATARE GSARISVEFE PGWDMSRATD DVRAAMDAIT
DLPEDAEEPV IRRNNWRDRI TDVVVHGPVG VDQLARFSDE FVARLFEAGV TRTTIRGIAA
PETLVEVATL DLIRHDLTLR EIADVIAGAV DSAPSGDIAG GSARVRTGTE TRSAEDLAAL
PLRTDADGNV LTVGDVATIF VGGVDRDRAY FVGANPAISV RVDRSEEGDA IAIQAQVAEV
AEALERDLPA GVRIELIRTR AEQISSRLNI LVDNGLLGLA LVVGLLFLFL NARTAFWVAA
GIPVAMMAAM SLMYLGGLTL NMVSLFALII TLGIVVDDAI VVGEHADYRA RYMGEDGPTA
AANAAIRMAP PVFTATITTV IAFFGLTAIG GSFGNLIYAI PFTVIAVLLA SLVECFLILP
NHMAHALAHS AREHWYDWPS RQVNRGLDWV KRVLFRRLIA FCIAARYPVF AGAIVLLLAQ
AALFVRGDVT WRFFNAPERG SITGNFAMLP GATREDTFEA MRLIQQGTDE VAARYEAEHG
LNPLAFVLTE VGGTTGRGLA GADSKDTDQL GSIAIDLIDA DLRPYSSFTF LADLQDAVPR
HPMLETLSFR GWRSGPGGDA LSVEFYGADT ETLKAAAEAL KTRLAIYPEV SALEDSLAYD
KQELILDLTP TGSQLGFDID ALGRELRARL NGIEAATYPV GTRTGAIRVE LPAAEIGPDF
LDRMLLRTPS GAYVPLADIV SVRSQEGFSR IQRENGLRVV SVTGDISEDD PVRAAEINTL
LIEEHLPRIQ EEFGVNYVQT GLAEQERAFL TDATIGFLLC LVGIYLCLAW IFSSWTRPAV
VMVVIPFGLI GAIWGHYVWD VPLSMFSVVG LIGMAGIIIN DSIVLVSTID EYGKERGLVP
AIIDGTVDRL RPVLLTTLTT VLGLTPLLYE GSQQAQFLKP TVITLVYGLG FGMVLVLILV
PAFMAMQQDI GRQLAALRRA LGAPLRAGGA GRAAILATAL CAGWAAATFG VSAVTGALPA
PLADMLPAGL SAPMATFVAF LGGVCAIALA TWLLSALILG LRGRARLRGE TRPTA