| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3081 |
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| Symbol | |
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| ID | 5710933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3248865 |
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| End bp | 3252272 |
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| Gene Length | 3408 bp |
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| Protein Length | 1135 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641269008 |
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| Product | efflux transporter |
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| Protein accession | YP_001534415 |
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| Protein GI | 159045621 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00863053 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGCTC TGGGCGGAAT TCTCACCTAT TTCACCCGGC ACCGGACGGC GGCGAACCTG
CTGCTGCTGA TGCTGCTGGC CATCGGCTTC GCAGTGATCC CCCAGATGCG GACCCAGTTC
TTTCCGGACG TGGTGGTCGA CGACATCACC GTGCAGGTCA GCTGGGACGG CGCCGGGGCC
GAGGATGTGG ACCGCGCCAT CGTGTCCCTG CTGGAGCCTG CCCTGCAGGC GGTCGAGGGC
GTGACCGAAA GCGACGCCAC CGCCCGCGAA GGTAGCGCAA GGATTTCGGT GGAGTTCGAG
CCCGGCTGGG ACATGAGCCG CGCCACCGAC GATGTGCGCG CCGCCATGGA TGCGATCACC
GACCTGCCCG AAGACGCCGA GGAGCCGGTG ATCCGGCGCA ACAACTGGCG CGACCGGATC
ACCGACGTGG TGGTGCACGG CCCCGTGGGT GTGGACCAGT TGGCGCGGTT CTCAGACGAA
TTCGTCGCCC GCCTTTTCGA GGCCGGGGTG ACCCGCACCA CGATCCGCGG CATCGCCGCC
CCCGAGACCC TGGTGGAGGT CGCCACGCTC GACCTGATCC GCCACGACCT GACCCTGCGC
GAGATCGCCG ACGTGATCGC GGGCGCGGTG GACAGCGCCC CTTCCGGCGA CATCGCCGGG
GGCAGCGCCC GGGTGCGCAC CGGCACCGAG ACCCGCAGCG CCGAGGACCT CGCCGCCCTG
CCCCTGCGCA CGGATGCGGA CGGCAACGTG CTGACCGTGG GCGATGTGGC GACGATCTTC
GTCGGCGGCG TGGACCGGGA CCGGGCCTAT TTCGTCGGCG CGAATCCGGC CATCTCGGTC
CGCGTCGACC GCTCCGAGGA GGGCGACGCG ATCGCCATCC AGGCCCAGGT GGCCGAGGTC
GCCGAAGCGC TGGAACGGGA CCTGCCCGCA GGGGTCCGGA TCGAGCTGAT CCGCACCCGG
GCGGAGCAAA TTTCCAGCCG CCTGAACATC CTGGTGGATA ACGGGCTGCT GGGCCTCGCA
CTTGTTGTGG GTCTGCTGTT CCTGTTTCTG AACGCGCGCA CCGCCTTCTG GGTTGCCGCC
GGCATCCCGG TTGCGATGAT GGCGGCGATG TCGCTGATGT ATCTCGGCGG GCTCACCCTG
AACATGGTGT CGCTCTTTGC GCTGATCATC ACCTTGGGGA TCGTGGTCGA TGACGCCATC
GTCGTGGGCG AGCATGCCGA TTACCGCGCG CGGTACATGG GCGAGGACGG CCCGACCGCC
GCCGCCAATG CCGCCATCCG CATGGCGCCC CCGGTCTTCA CGGCCACGAT CACCACGGTC
ATCGCGTTCT TCGGTCTGAC GGCCATCGGC GGGAGTTTCG GCAACCTGAT CTATGCGATT
CCCTTCACGG TGATCGCGGT GCTGCTGGCC AGCCTGGTGG AGTGTTTCCT GATCCTGCCG
AACCACATGG CCCATGCGCT GGCCCATTCC GCCAGGGAAC ACTGGTACGA CTGGCCCTCG
CGCCAGGTGA ACCGGGGCCT TGACTGGGTG AAACGGGTGC TGTTCCGCCG CCTGATCGCC
TTCTGCATCG CTGCGCGCTA CCCGGTCTTT GCCGGGGCCA TCGTGCTGCT CCTGGCGCAG
GCGGCGCTGT TCGTGCGGGG CGACGTGACA TGGCGCTTCT TCAACGCGCC CGAGCGCGGC
TCGATCACCG GCAATTTCGC CATGCTGCCC GGCGCGACCC GCGAAGACAC GTTCGAGGCC
ATGCGCCTGA TCCAGCAAGG CACGGACGAG GTTGCCGCCC GCTACGAGGC CGAGCATGGG
CTCAATCCGC TGGCCTTCGT GCTGACCGAG GTGGGCGGCA CCACCGGGCG CGGCCTTGCC
GGCGCCGACA GCAAGGATAC CGATCAGCTG GGCTCCATCG CCATCGACCT GATCGACGCC
GACCTGCGCC CCTATTCGTC CTTCACCTTC CTTGCGGACC TGCAGGACGC CGTCCCGCGC
CACCCGATGC TGGAGACCCT GAGCTTCCGC GGCTGGCGTT CCGGTCCGGG CGGCGATGCG
CTCTCGGTGG AGTTCTACGG CGCGGATACA GAAACGCTCA AGGCCGCCGC CGAGGCGCTC
AAGACCCGGC TCGCGATCTA CCCGGAGGTC TCGGCGCTGG AGGACAGCCT GGCCTATGAC
AAGCAAGAGC TGATCCTCGA TCTGACCCCC ACGGGCAGCC AGCTGGGCTT CGACATCGAC
GCGCTGGGGC GCGAGTTGCG CGCGCGGCTC AACGGGATCG AGGCGGCGAC CTATCCCGTG
GGCACCCGCA CCGGCGCAAT CCGGGTGGAA CTGCCCGCCG CCGAGATCGG CCCGGATTTC
CTCGACCGGA TGCTGCTGCG CACCCCCTCG GGCGCCTATG TGCCCCTGGC CGATATCGTC
TCGGTCCGCA GCCAGGAGGG GTTCTCCCGC ATCCAGCGCG AGAACGGGCT TCGGGTGGTC
TCGGTGACCG GCGACATCTC GGAGGACGAC CCGGTCCGGG CCGCCGAGAT CAACACCCTG
CTGATCGAAG AGCACCTGCC CCGCATCCAG GAAGAATTCG GCGTCAACTA CGTTCAGACC
GGCCTCGCGG AGCAGGAGCG CGCCTTCCTG ACCGACGCCA CCATCGGCTT CCTGCTCTGC
CTCGTGGGGA TCTACCTGTG CCTGGCCTGG ATCTTCTCCA GCTGGACGCG GCCCGCTGTG
GTGATGGTGG TGATCCCGTT CGGGTTGATC GGGGCGATCT GGGGGCATTA CGTCTGGGAC
GTGCCGCTGT CGATGTTCTC GGTGGTGGGC CTGATCGGCA TGGCGGGGAT CATCATCAAC
GATTCCATCG TGCTGGTGAG CACGATCGAC GAATACGGCA AGGAGCGGGG CCTCGTCCCC
GCCATCATCG ACGGGACGGT GGACCGGCTG CGGCCCGTGT TGCTGACCAC CCTGACCACG
GTGCTCGGCC TCACGCCGCT GCTCTACGAA GGCTCGCAGC AGGCGCAGTT CCTCAAGCCC
ACGGTGATCA CGCTGGTCTA CGGATTGGGG TTCGGGATGG TGCTGGTGCT GATCCTCGTG
CCCGCCTTCA TGGCGATGCA GCAGGATATC GGCCGGCAAC TGGCCGCCCT GCGCCGGGCG
CTCGGCGCGC CGCTGCGCGC CGGGGGCGCC GGGCGCGCGG CCATCCTGGC CACGGCCCTC
TGCGCCGGCT GGGCCGCAGC CACCTTCGGG GTGTCCGCCG TCACCGGAGC TCTGCCTGCC
CCGCTGGCGG ACATGCTGCC CGCGGGCCTC TCGGCGCCCA TGGCCACCTT CGTCGCCTTC
CTGGGCGGGG TCTGTGCCAT CGCGCTTGCA ACCTGGTTGC TCAGCGCGCT GATCCTGGGC
TTGCGGGGTC GCGCCCGTCT GAGGGGCGAG ACGCGTCCAA CCGCTTGA
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| Protein sequence | MGALGGILTY FTRHRTAANL LLLMLLAIGF AVIPQMRTQF FPDVVVDDIT VQVSWDGAGA
EDVDRAIVSL LEPALQAVEG VTESDATARE GSARISVEFE PGWDMSRATD DVRAAMDAIT
DLPEDAEEPV IRRNNWRDRI TDVVVHGPVG VDQLARFSDE FVARLFEAGV TRTTIRGIAA
PETLVEVATL DLIRHDLTLR EIADVIAGAV DSAPSGDIAG GSARVRTGTE TRSAEDLAAL
PLRTDADGNV LTVGDVATIF VGGVDRDRAY FVGANPAISV RVDRSEEGDA IAIQAQVAEV
AEALERDLPA GVRIELIRTR AEQISSRLNI LVDNGLLGLA LVVGLLFLFL NARTAFWVAA
GIPVAMMAAM SLMYLGGLTL NMVSLFALII TLGIVVDDAI VVGEHADYRA RYMGEDGPTA
AANAAIRMAP PVFTATITTV IAFFGLTAIG GSFGNLIYAI PFTVIAVLLA SLVECFLILP
NHMAHALAHS AREHWYDWPS RQVNRGLDWV KRVLFRRLIA FCIAARYPVF AGAIVLLLAQ
AALFVRGDVT WRFFNAPERG SITGNFAMLP GATREDTFEA MRLIQQGTDE VAARYEAEHG
LNPLAFVLTE VGGTTGRGLA GADSKDTDQL GSIAIDLIDA DLRPYSSFTF LADLQDAVPR
HPMLETLSFR GWRSGPGGDA LSVEFYGADT ETLKAAAEAL KTRLAIYPEV SALEDSLAYD
KQELILDLTP TGSQLGFDID ALGRELRARL NGIEAATYPV GTRTGAIRVE LPAAEIGPDF
LDRMLLRTPS GAYVPLADIV SVRSQEGFSR IQRENGLRVV SVTGDISEDD PVRAAEINTL
LIEEHLPRIQ EEFGVNYVQT GLAEQERAFL TDATIGFLLC LVGIYLCLAW IFSSWTRPAV
VMVVIPFGLI GAIWGHYVWD VPLSMFSVVG LIGMAGIIIN DSIVLVSTID EYGKERGLVP
AIIDGTVDRL RPVLLTTLTT VLGLTPLLYE GSQQAQFLKP TVITLVYGLG FGMVLVLILV
PAFMAMQQDI GRQLAALRRA LGAPLRAGGA GRAAILATAL CAGWAAATFG VSAVTGALPA
PLADMLPAGL SAPMATFVAF LGGVCAIALA TWLLSALILG LRGRARLRGE TRPTA
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