| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3074 |
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| Symbol | |
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| ID | 5710926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3240971 |
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| End bp | 3242725 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641269001 |
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| Product | TPR domain protein |
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| Protein accession | YP_001534408 |
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| Protein GI | 159045614 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.83813 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAGTG CCGCGCCGCG CCGCTACGCT CTGGTGTACC TCTCTTCCCC ATCGAAAGGC
GCAGTCATGG ATAGAAAGGC GAAACGCACA CTCGGATGGG TTCTGGCCGC GGCCCTTGCG
CTGCCCCTCG CCCCGCCGGT CCAGGCCGCG CCCGATGGGG TTGCGGGCGC CTATCTCGCC
GGTCGGGCTG CGAGCCTGAA CAGCGATTAT CGCGATGCCG CCCGCTACTA CGCCCGCGCC
CTGATGCGTG ACCGTGCGAA CCCGGCGCTG ATGGAAAGCG CCGCGATTGC CTTCCTCGCC
CTGGGCGACC AGGCCAGCGC CTATCCCATC GCCCTGAAAC TGGCCGAGGG GTATCCCACC
AACCAGATCG CCAACCTGAT CCTCGCCGCC GATGTGCTTG GCCCCGATGG CAGCCTCGAC
ATGGATGTGC CCAGCGTCGG CCCCGTGGGC GACCTGCTGG TCGCGGGGTG GCGCGCGCTC
GACCGGGGAC GGCCCGCCGA GGCGCTCGCC GCCTTCGACG AGATGATCGA CGACCCCCGC
ACCCGCGCCT TCGGGATCTA CCACAAGGCC ATGGCGCTCG CGCAGGTGGG GGATTTCGAA
GGGGCCGATG CGCTTTTCCT CGAAGACGGC AGCATCGCCG CAAGCCTCTC GGGCCGCGCG
ATCATCGCCC ACGCCCAGGT ACTGGCCCAG CTCGACCGCG CCGACGAGGC CCGCACCCTG
ATCGAGACCC GGATCGGCGC GGACGACCCG CGTGGGGCCG CCATCCTCGA CGCGCTCGAC
GCAGGCACCC TGGTCTTCGA CGTGGTGCCG GACCCCGCCG CGGGCTATGC CGAGACCTTC
TTCACCGTGG CGATCGCGCT GAACGGTCAG GCGGCGGATG CCTTCACCCT GCTCTATGCG
CGCCTCGCCC AGATCCTTGC GCCGGAACAT ATCGACGCGC TCCTGCTGAC CGCGAGCCTG
CTGGAAGACC TGGAACAGTT CGATCTGGCC AACCAGGTCT ATGACAAGGT CCCCCGTGAC
AGCCCCGCCT TCCTGACCGC CGAGATCGGC CGCGCCAACG TGCTGCGCGA GGCGGGCAAG
GCCGACGCCG CGATCGAGGT GCTGACCCAG CTGGTCGAAA CCCATGGCGA CGTGGCCCGG
GTTCATGCGG CGCTCGCCGA CACCCACCGC CGGATGGAGA ATTTCGCCGA AGCCGCCGAG
GCCTATGACG CCGCCATCGC CATCGCCGAA GCCCAGGGCC AGGACGACTG GGTGCTCTAC
TACGCCCGCG GCATCGCCCA TGAACGGATC GGCGACTGGG ACGAGGCGGA GGTCGACCTG
CGCCGCGCGC TGGAACTCAA TCCGGGCCAG CCCATGGTGC TGAATTATCT CGGCTATTCC
TTCGTCGAGA TGGGCGAGAA CATGGACGAA GCCCTCGCCA TGATCGAAGA AGCCGTCGCC
GCCCGGCCCG ACAATGGCTA TATCACCGAC AGCCTCGGCT GGGTGCTCTA CCGGATGGAA
CGCTACGAGG AGGCCGTGCC GCTGATGGAG CGCGCCGTCG CGCTCGAGCC GCTCGACCCG
ATCATCAACG ACCATCTGGG CGACGTCTAT TACGCCGTGA ACCGCAAGCG CGAGGCGGAG
TTCCAGTGGA AGCGCGCCCT GTCCTTCGAT CCCGAGGAAG AAGACGCCGA GCGTATCCGC
CGCAAACTGC AGGTCGGGCT CGATGCCGTG CTGATCGAAG AGGGGGCCGA CCCCATCCAT
GTCGCCACCG ACTGA
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| Protein sequence | MDSAAPRRYA LVYLSSPSKG AVMDRKAKRT LGWVLAAALA LPLAPPVQAA PDGVAGAYLA
GRAASLNSDY RDAARYYARA LMRDRANPAL MESAAIAFLA LGDQASAYPI ALKLAEGYPT
NQIANLILAA DVLGPDGSLD MDVPSVGPVG DLLVAGWRAL DRGRPAEALA AFDEMIDDPR
TRAFGIYHKA MALAQVGDFE GADALFLEDG SIAASLSGRA IIAHAQVLAQ LDRADEARTL
IETRIGADDP RGAAILDALD AGTLVFDVVP DPAAGYAETF FTVAIALNGQ AADAFTLLYA
RLAQILAPEH IDALLLTASL LEDLEQFDLA NQVYDKVPRD SPAFLTAEIG RANVLREAGK
ADAAIEVLTQ LVETHGDVAR VHAALADTHR RMENFAEAAE AYDAAIAIAE AQGQDDWVLY
YARGIAHERI GDWDEAEVDL RRALELNPGQ PMVLNYLGYS FVEMGENMDE ALAMIEEAVA
ARPDNGYITD SLGWVLYRME RYEEAVPLME RAVALEPLDP IINDHLGDVY YAVNRKREAE
FQWKRALSFD PEEEDAERIR RKLQVGLDAV LIEEGADPIH VATD
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