Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3072 |
Symbol | ispB |
ID | 5710924 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 3239127 |
End bp | 3240131 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641268999 |
Product | octaprenyl-diphosphate synthase |
Protein accession | YP_001534406 |
Protein GI | 159045612 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.436808 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCTTGG ATACCCCTGC CGCAACCAAA CCGCATGAGC GCCTCGCGAC CCACCTGGCC GAAGACATGG ACGCGGTGAA CGTGCTGATC CGGGAGCGGA TGGCCTCGGA ACACGCGCCG CGCATCCCCG AGGTGACAGC GCATCTGGTC GAGGCCGGCG GCAAGCGGCT GCGCCCGATG CTGACGCTGG CGACCGCGCG GCTCTGCGGC TACACCGGGC CTTACCATGT GCATCTCGCG GCGACGGTGG AGTTCATTCA CACCGCGACG CTGCTTCATG ACGACGTGGT GGACGAGAGC AACCAGCGGC GCGGACGGCC CACGGCGAAC CTTTTGTGGG ACAACCAGTC GAGCGTGCTG GTGGGCGATT ACCTGTTCGC GCGGTCCTTC CAGTTGATGG TCGAGACCGG CTCCCTGCGG GTTCTGGACA TCTTGGCGAA CGCGGCGGCG ACGATTGCCG AGGGCGAGGT GCTGCAACTG TCGGCGGCGC AGGACCTGGC GACGGACGAG GACATCTACC TCAAGGTGGT GCGGGGCAAG ACCGCGGCGC TGTTCTCGGC GGCCACCGAG GTGGGCGGCG TGATCGCAGG CGCCGACGAG GCGCAGGTGC GCGCGCTCTT CACCTATGGC GATGCGTTGG GCATCGCGTT CCAGATCGTC GACGACCTGC TGGATTACGG CGGGGACAGT ACCAAGACCG GCAAGAATAT CGGCGACGAT TTCCGGGAGC GTAAGCTGAC CCTGCCCGTG ATCAAGGCGG TGGCCAAGGC GGATCTGGAA GAGCGCGCCT TCTGGAGCCG GGTGATCGAG AAGGGCGACC AGCGCGACGG GGATCTTGAG CATGCGCTCG CGCTTCTGGA CCGGCACGGC GCGATGGCGG CGACCCGGGC CGATGCGGTG GCCTATGCCG CCCAGGCCAA GGCCGCGCTG GAGGCGGTGG CGCCCCATCC GTTGACCGAC ATGCTGCGCG ATCTGGCCGA TTACGTGGTG GCGCGGGTCA CCTGA
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Protein sequence | MSLDTPAATK PHERLATHLA EDMDAVNVLI RERMASEHAP RIPEVTAHLV EAGGKRLRPM LTLATARLCG YTGPYHVHLA ATVEFIHTAT LLHDDVVDES NQRRGRPTAN LLWDNQSSVL VGDYLFARSF QLMVETGSLR VLDILANAAA TIAEGEVLQL SAAQDLATDE DIYLKVVRGK TAALFSAATE VGGVIAGADE AQVRALFTYG DALGIAFQIV DDLLDYGGDS TKTGKNIGDD FRERKLTLPV IKAVAKADLE ERAFWSRVIE KGDQRDGDLE HALALLDRHG AMAATRADAV AYAAQAKAAL EAVAPHPLTD MLRDLADYVV ARVT
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