Gene Dshi_3072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3072 
SymbolispB 
ID5710924 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3239127 
End bp3240131 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content68% 
IMG OID641268999 
Productoctaprenyl-diphosphate synthase 
Protein accessionYP_001534406 
Protein GI159045612 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0142] Geranylgeranyl pyrophosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.436808 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTTGG ATACCCCTGC CGCAACCAAA CCGCATGAGC GCCTCGCGAC CCACCTGGCC 
GAAGACATGG ACGCGGTGAA CGTGCTGATC CGGGAGCGGA TGGCCTCGGA ACACGCGCCG
CGCATCCCCG AGGTGACAGC GCATCTGGTC GAGGCCGGCG GCAAGCGGCT GCGCCCGATG
CTGACGCTGG CGACCGCGCG GCTCTGCGGC TACACCGGGC CTTACCATGT GCATCTCGCG
GCGACGGTGG AGTTCATTCA CACCGCGACG CTGCTTCATG ACGACGTGGT GGACGAGAGC
AACCAGCGGC GCGGACGGCC CACGGCGAAC CTTTTGTGGG ACAACCAGTC GAGCGTGCTG
GTGGGCGATT ACCTGTTCGC GCGGTCCTTC CAGTTGATGG TCGAGACCGG CTCCCTGCGG
GTTCTGGACA TCTTGGCGAA CGCGGCGGCG ACGATTGCCG AGGGCGAGGT GCTGCAACTG
TCGGCGGCGC AGGACCTGGC GACGGACGAG GACATCTACC TCAAGGTGGT GCGGGGCAAG
ACCGCGGCGC TGTTCTCGGC GGCCACCGAG GTGGGCGGCG TGATCGCAGG CGCCGACGAG
GCGCAGGTGC GCGCGCTCTT CACCTATGGC GATGCGTTGG GCATCGCGTT CCAGATCGTC
GACGACCTGC TGGATTACGG CGGGGACAGT ACCAAGACCG GCAAGAATAT CGGCGACGAT
TTCCGGGAGC GTAAGCTGAC CCTGCCCGTG ATCAAGGCGG TGGCCAAGGC GGATCTGGAA
GAGCGCGCCT TCTGGAGCCG GGTGATCGAG AAGGGCGACC AGCGCGACGG GGATCTTGAG
CATGCGCTCG CGCTTCTGGA CCGGCACGGC GCGATGGCGG CGACCCGGGC CGATGCGGTG
GCCTATGCCG CCCAGGCCAA GGCCGCGCTG GAGGCGGTGG CGCCCCATCC GTTGACCGAC
ATGCTGCGCG ATCTGGCCGA TTACGTGGTG GCGCGGGTCA CCTGA
 
Protein sequence
MSLDTPAATK PHERLATHLA EDMDAVNVLI RERMASEHAP RIPEVTAHLV EAGGKRLRPM 
LTLATARLCG YTGPYHVHLA ATVEFIHTAT LLHDDVVDES NQRRGRPTAN LLWDNQSSVL
VGDYLFARSF QLMVETGSLR VLDILANAAA TIAEGEVLQL SAAQDLATDE DIYLKVVRGK
TAALFSAATE VGGVIAGADE AQVRALFTYG DALGIAFQIV DDLLDYGGDS TKTGKNIGDD
FRERKLTLPV IKAVAKADLE ERAFWSRVIE KGDQRDGDLE HALALLDRHG AMAATRADAV
AYAAQAKAAL EAVAPHPLTD MLRDLADYVV ARVT