| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3059 |
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| Symbol | lysA |
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| ID | 5710911 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3228631 |
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| End bp | 3229926 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641268986 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001534393 |
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| Protein GI | 159045599 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.038181 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCATT TCACCTATAT CAAAGGCCAG CTCCATGCGG AGGATGTCCC GGTCTCCGCC
ATCGCCGACG CGGTGGGCAC GCCTTTCTAC GTCTATTCCA CCGCGACCCT GACCCGGCAT
TTCAAGCTCT TCGACGAGGC GCTCTCCTGG GGCCCGCACC TTGTGTGCTT CGCGATGAAG
TCGAACTCCA ACCAGGCGAT CCTGAAGCTG CTTGCCGATC TCGGCGCGGG CATGGACGTG
GTCTCGGGCG GCGAATACGC CCGCGCGCGG GCCGCCGGCG TGCCCGGCGA CCGGATCGTG
TTCTCCGGCG TCGGCAAGAC CGCCGACGAG ATGCGCATGG CCCTGACCGG CGGCATCCGC
CAGTTCAACG TGGAATCCGA ACCCGAGATG CAGCGGCTTT CCGCCGTCGC CCAGGGCCTC
GGGATGCAGG CCCCGATCAC CATCCGCGTC AACCCGGATG TGGACGCCAA GACCCACGAG
AAGATCGCCA CCGGCAAGTC CGAGAACAAG TTCGGCATCC CGATCTCCCG CGCCCGCGAA
GTCTATGCCC AGGCCGCCCG CCTGCCGGGG ATCAAGGTCA TCGGCATCGA CGTCCATATC
GGCAGCCAGC TGACCGAGCT CGAACCGTTC GAGCTGGCCT ATGCCAAGGT GGCCGAGCTG
ACCCGGCACT TGCGCGCGGA CGGGCACGAG ATCACCCGCC TCGACCTCGG CGGCGGCCTC
GGCATCCCCT ATGCCCGCAC CAACGAGGCC CCGCCCCTGC CCACCGACTA CGGCGCGTTG
ATCCAGCGCA CGGTGGGCGA TCTGGGCTGC GAGATCGAGA TCGAGCCGGG CCGCCTGATC
TCCGGCAATG CGGGACTGTT GGTATCCGAG GTGATCTACG TCAAGCAGGG CGAGGACCGG
CAATTCCTGA TCCTCGACGC GGCAATGAAC GACCTGATCC GCCCGTCGAT GTACGGCGCC
TACCACGACA TCGTCCCGGT CCGCGAGGCC GCCCCGGGCA CGCCCACGAC CCCCTACGAC
ATCGTCGGCC CCGTCTGCGA GAGCGGCGAT ACCTTCGCCA AGAGCCGTGA AATGGTGCCC
CTCACCGAGG GCGATCTGGT GGCCTTCCGC TCCGCCGGGG CCTACGGCGC CGTCATGGCG
TCGGAATACA ATACCCGCCC CCTGATCCCG GAAGTTCTGG TCCACGGGGA TCAATTCGCT
GTCATCCGTC AGCGGCCCAG CTTTGACGAA ATCATAAATC GCGATACCAT TCCTGCATGG
CTGGTGGATA CTCCCGTCCC CGCCGAGCAG GAATGA
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| Protein sequence | MDHFTYIKGQ LHAEDVPVSA IADAVGTPFY VYSTATLTRH FKLFDEALSW GPHLVCFAMK
SNSNQAILKL LADLGAGMDV VSGGEYARAR AAGVPGDRIV FSGVGKTADE MRMALTGGIR
QFNVESEPEM QRLSAVAQGL GMQAPITIRV NPDVDAKTHE KIATGKSENK FGIPISRARE
VYAQAARLPG IKVIGIDVHI GSQLTELEPF ELAYAKVAEL TRHLRADGHE ITRLDLGGGL
GIPYARTNEA PPLPTDYGAL IQRTVGDLGC EIEIEPGRLI SGNAGLLVSE VIYVKQGEDR
QFLILDAAMN DLIRPSMYGA YHDIVPVREA APGTPTTPYD IVGPVCESGD TFAKSREMVP
LTEGDLVAFR SAGAYGAVMA SEYNTRPLIP EVLVHGDQFA VIRQRPSFDE IINRDTIPAW
LVDTPVPAEQ E
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