| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3042 |
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| Symbol | truB |
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| ID | 5710894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3210502 |
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| End bp | 3211416 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641268969 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_001534376 |
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| Protein GI | 159045582 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.877322 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGACGGC GCAAGAAGGG CCGCGCGGTC TCCGGCTGGA TCGTGATCGA CAAACCCGCG
GGGCTGAGCT CCAACGCGGT GGTGGGCAAG GTCCGCTGGG CCTTCGATGC ACAGAAGGCG
GGCCATGCGG GCACCCTCGA CCCCGAGGCG ACGGGCGTTC TGGCCATAGC ACTCGGCGAG
GCGACCAAGA CCGTCCCCTT CGTGACCGAC GCGCTGAAGG CCTACGAATT CACCGTGCGG
CTGGGCCAAG CCACCAACAC CGATGACGGC GAAGGAGAGG TGACCGAGAC CAGCGATGCG
CGCCCCTCCG ATGACGAGAT CCGCGCCGCC CTGCCCCCTT TCGAAGGCGA CATCCTGCAG
GTTCCGCCGC AATTCTCGGC CGTGAAGATC GATGGGGAGC GTGCCTATGC CCGCGCCCGC
GCCGGGCAAG AGATGGAGAT CGCGGCCCGC CCGCTCTATG TCGACAGCCT CACCTTCATC
GCCCGCCCCG ACCCCGACCA CGTCACGCTC GAGATGGTCT GCGGAAAGGG CGGCTATGTC
CGGTCCATCG CTCGCGACCT GGGCCGTGCG CTCGGCTGCT TCGGCCATGT CAAATCCCTG
CGCCGCACCT GGTCCGGGCC TTTCGAGCTC TCCGATGCGA CTCCGTTGGA GACGCTTGAA
GACCTGGCCA AGGACCCGGC CCTCGATGCC CACCTGATGC CCCTGGAGAC CGGGCTTGCC
GACCTGCCGG AATTGCCCTG CACCCCCGAG GGGGCGGCGC GGATGCGCAA CGGCAACCCG
GGCATGGTAC GCGCCTCGGA CGCGGAATAT GGCGAGACCG CCTGGGCCTC TTACAACGGC
ACGGCCGTGG CCGTGGGCAC CTACCGCGCC GGGGAATTGC ACCCCACCCG CGTGTTCCAA
CACGGAGCCT TGTGA
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| Protein sequence | MGRRKKGRAV SGWIVIDKPA GLSSNAVVGK VRWAFDAQKA GHAGTLDPEA TGVLAIALGE
ATKTVPFVTD ALKAYEFTVR LGQATNTDDG EGEVTETSDA RPSDDEIRAA LPPFEGDILQ
VPPQFSAVKI DGERAYARAR AGQEMEIAAR PLYVDSLTFI ARPDPDHVTL EMVCGKGGYV
RSIARDLGRA LGCFGHVKSL RRTWSGPFEL SDATPLETLE DLAKDPALDA HLMPLETGLA
DLPELPCTPE GAARMRNGNP GMVRASDAEY GETAWASYNG TAVAVGTYRA GELHPTRVFQ
HGAL
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