| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3036 |
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| Symbol | |
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| ID | 5710888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3203392 |
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| End bp | 3206619 |
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| Gene Length | 3228 bp |
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| Protein Length | 1075 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641268963 |
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| Product | efflux transporter |
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| Protein accession | YP_001534370 |
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| Protein GI | 159045576 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.199533 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCCGG TGATCAAATG GATGACCGAA CACCCGGTCG CCGCGAACCT GACCATGGTG
CTGGTGCTTG TGGTCGGGCT TCTGAGCCTG TTCGCCATCC CGCAGAAGAC ATTTCCGGAC
TTCACCCTCG AAGTGGTCGA TATCCGCGTG GTCTATCCCG GGGCCTCCCC GGGCGAGATC
GAGCAGAGCA TCATCCGCCC GATCGAGGAC CAGATCAGCG GCATCGACGG TGTGGACGAG
GTCACCGCCA CGGCGCGCGA AGGCTCCGGC CAGGTGTCGG TGGCCCTGCT GCTGGGGGCG
GATGTGGCCG AGAAGCTCGA CGAGGTGAAG ACCGAGATCG ACCGCATCAC CACCTTCCCC
GAGGATGCCG AGGAGCCGAC CGTCACCCAA CGCTCCAACC GCTCCCGCGC TTTGGAGATC
GCGATTCACG GCCCGGTGCC GGAACAGGTG CTGAAGGAAG AGGCCGAGCG GCTGAAATCC
GAGCTGACCC AGCTGCCCTC GGTATCCTTT GTCGAAACGG CGAACCTGCG CGACTACGAA
ATTTCCATCG AGGTGGACCG CGACACGCTC AATGCCTATG GGCTGACACT GGCGCAGGTC
AGTCAGATCG TCGCTGCGAA TTCGCTGGAA CTGCCGGGAG GCGAGATCGA AACCGCGACC
CTGTCGATCC CCCTGCGCAC GCTCGGGCGG AACTACACCC GCGCGGATTT CGAGAACATC
GTGGTGCTGA CCAATGATGC AGGCGCCAAG GTGTTCCTGC GCGACATCGC GACGGTGATC
GACGGGTTCG AGGACAGCGA TATCTCCGCC CGGTTCGGCG GCAACCCTTC GGCCACGGTC
AACGTGTTCC GCGTGGGCGA CGAGCAGCTT CTGGATATCG TGTCGGATGT GAAGGTGCAT
CTGGACGAGA GTTTCCGCGC CTCCCTGCCG GCAGGGGTCG ACGTGACCCT CTGGCAGAAC
GATGCGGACG AGTTGCAGAG CCGGCTCGAC CTGCTGATCG AGAACGCGGT GCTGGGCCTG
GCGCTGGTGG TGCTGTGCCT GACGCTGTTT CTCGACTTCC GGCTGGCCTT CTGGGCGGCG
GCGGGGATCG CGGTCGCCTT TGCCGCCAGT TTTGCGGTGC TGAACACCAT CGGCATGTCG
ATCAACATGA TCTCGCTCTT TGGCTTCATT CTGGCCATCG GGATCGTGGT GGATAATGCC
ATCGTGATCG GTGAGAACAT CTACAAGAAC GGCGAGGCGG GGCTGAGCCC CATGGATGCC
GCGGTCAAGG GCACCCAGCG CGTGGCGGTG CCGGTGGTGT TCTCGGCGCT CACCACGGTG
GTGGCGTTCA TGCCGCTCTT CGAGATGCCG GGCACGCTGG GCAAGTTCCT GGGCGATATT
CCGGCGGTGG TGATCATCGT GCTGCTCTTG AGCCTGTTGC AGGCGCTCTT CATCCTGCCG
CGCAACCTCA GCCGTTTGGA CGTGTCGCCG AGCTATCGCC CCAATATCGT GCTGCGCGGG
CTGAACGCGG TGCGCCGTGT GATCGACCGG GGCCTGCAAT GGTTCATCGC CCGGCCCTTC
GACGCGGCAC TGCGGTTTGC CACGCGCTAC TGGCTGGTGC CCATCGGGGC GGTGATCGGC
ATGATGATCG TGACCGTCGG GTTGCTGGCC CATGGATATG TGAAGTTCAA TTTCTTCCCG
GCGATCGACG GCAAGTTCGT CACCGCCAAT ATCGAGATGG TCGACGGCAC CACCTTCGAT
CGAACCGAAA CCGTGGCCGA GCAGGTCCGC GTCGCCGCCG TGCGGGCGGG CGACCGGATC
GCGGCGGACC TGCCCATGGA CGAGGCGGCG GTGGTCGAGA ATATCGCCGT TGTGATCGGG
CAGGGCGCCG GGGGCGGTGG TCCTGCGGGC GGCACGGCCA CGACGGGGGC GACCCTGGCC
AACGTTGTGG TGCGCGTCAC CGATCCCGAG CTGCGCGACT GGCCGACCCG GGATTACGTC
GCCGCCTGGC GCGACGAGAT CGGCGATATC GCCGGGATCA AGGTGCTCGA TGTGTCGTCG
GCCCTGATCG ACGCGGGCGA TGCCATCGCG GTGGAGCTGT CCTTGCCCGA CGGCCAGGAC
ATTGCGCCGG TGGTGGACGC ATTGCGCGAG GGGCTGCGGG GTATTCCCGG TGTGTTTTCG
ATCCGCGATG ACCTGTCGGC CGGGCGGCTG GAGTACAAGC TGTCCCTGCG CGAGGATGCC
CGTATCTACG GCGTGACCCT GTCGGACCTG GCCAGTCAGA TGCGCAACGG CTTCTTCGGG
ATCGAGGCGA CGCGGGTGCA GCGCGGCCGG GACGATGTGC GGGTCTTCGT GCGCCTGCCC
GCGAACCAGC GTGACAGCCT CGCGGACCTT CTAGACTTCA AGATCCGCAC CGCCGCGGGC
GACCTGATCG CGCTGGGCGA TGTGGCCGAG ATCACCGAGG GGCTTGCCCC CACCGAGATC
CTGCGCCGCA ACGCCCGCAC CATCACCACG GTCACCGCCG ATGTGGATGC CTCGGTCATC
ACGTCCAGCG AGGCCAACGC GCTGATCACC GCCGAGCTGA TCCCGCCCCT CGCGGCGCGT
TACGAAGGCC TGATCGTGGA ATTCGGCGGT GAACAGCGCA CCCAAGGCGA TGCGGGCACG
GCCCTGGGCA AGGCGCTGGC CGTGGCGCTC TTCGTGATCT TTGCACTGCT GGCGCTTGTG
TTCCGGTCTT ACGTGCAGCC GCTGGTGGTG ATGGTCGCGA TCCCGCTGGG TCTGATCGGG
GCGGTGATGG GGCACATGAT CATGGGGCTG CCCCTGACGA TCCTGTCGAT CTTCGGGATC
ATCGGGCTGG CTGGTGTTGT GATCAACAAC TCCCTGGTGA TGATCGACCT CTACAACGAG
TATCTGGACA AGGGCCACGC CCTGCGCGCC GCGGTGATCG AGGGCACGAA GGACCGGTTC
CGGCCGATCC TGCTGACCTC GCTCACGACC TTCCTCGGGG TCTTTCCGCT GATCATGGAA
ACCTCGCTGC AGGCGCAGTT TCTGATCCCG CTGGCGGTGT CCATCGGCTA CGGGGTGCTC
TTCGGTACGG CGATCATCCT GCTGGCGGTT CCGGCGGTGT TCATCGCACA AGCCCGGGCG
TTCGACCTGG TGGCGCGGCT CTTCGGAGCG GCCGCGCCGC AGCTGCCCGA ACCCGCACCC
GACCCCTTGC CTGCGTCCCG TCTCGCCTCG GTCCGGGCGG CGGAATAG
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| Protein sequence | MNPVIKWMTE HPVAANLTMV LVLVVGLLSL FAIPQKTFPD FTLEVVDIRV VYPGASPGEI
EQSIIRPIED QISGIDGVDE VTATAREGSG QVSVALLLGA DVAEKLDEVK TEIDRITTFP
EDAEEPTVTQ RSNRSRALEI AIHGPVPEQV LKEEAERLKS ELTQLPSVSF VETANLRDYE
ISIEVDRDTL NAYGLTLAQV SQIVAANSLE LPGGEIETAT LSIPLRTLGR NYTRADFENI
VVLTNDAGAK VFLRDIATVI DGFEDSDISA RFGGNPSATV NVFRVGDEQL LDIVSDVKVH
LDESFRASLP AGVDVTLWQN DADELQSRLD LLIENAVLGL ALVVLCLTLF LDFRLAFWAA
AGIAVAFAAS FAVLNTIGMS INMISLFGFI LAIGIVVDNA IVIGENIYKN GEAGLSPMDA
AVKGTQRVAV PVVFSALTTV VAFMPLFEMP GTLGKFLGDI PAVVIIVLLL SLLQALFILP
RNLSRLDVSP SYRPNIVLRG LNAVRRVIDR GLQWFIARPF DAALRFATRY WLVPIGAVIG
MMIVTVGLLA HGYVKFNFFP AIDGKFVTAN IEMVDGTTFD RTETVAEQVR VAAVRAGDRI
AADLPMDEAA VVENIAVVIG QGAGGGGPAG GTATTGATLA NVVVRVTDPE LRDWPTRDYV
AAWRDEIGDI AGIKVLDVSS ALIDAGDAIA VELSLPDGQD IAPVVDALRE GLRGIPGVFS
IRDDLSAGRL EYKLSLREDA RIYGVTLSDL ASQMRNGFFG IEATRVQRGR DDVRVFVRLP
ANQRDSLADL LDFKIRTAAG DLIALGDVAE ITEGLAPTEI LRRNARTITT VTADVDASVI
TSSEANALIT AELIPPLAAR YEGLIVEFGG EQRTQGDAGT ALGKALAVAL FVIFALLALV
FRSYVQPLVV MVAIPLGLIG AVMGHMIMGL PLTILSIFGI IGLAGVVINN SLVMIDLYNE
YLDKGHALRA AVIEGTKDRF RPILLTSLTT FLGVFPLIME TSLQAQFLIP LAVSIGYGVL
FGTAIILLAV PAVFIAQARA FDLVARLFGA AAPQLPEPAP DPLPASRLAS VRAAE
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