Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3026 |
Symbol | pdhR |
ID | 5710878 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 3195719 |
End bp | 3196486 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641268953 |
Product | pyruvate dehydrogenase complex repressor |
Protein accession | YP_001534360 |
Protein GI | 159045566 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.509676 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.414999 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCATTCC AGCGTATCCA GTCGGAAAAA CTCTCGCACT CGGTCATTCG CCAGATCGAA CAACTCGTTC TGCGCGGCAT TCTGCGGCCC GGAGAGCGGC TCCCCTCGGA GCGGGAGCTG TCCGAGAAGC TCGGTGTCTC CCGTCCGTCC CTGCGCGAAG CACTGGCCGA GTTGCAGACC CGTGGGCTGC TGGAGACCCG CGCGGGTGCG GGCGTATTCG TGGCCGATGT GCTCGGCTCC GCCTTCTCGG ACGCGCTGAT CCAGCTTTTC GCCAAGCATG ACGAGGCGGT GTTCGACTAT CTTGCCTTCC GCCGCGACTT GGAGGGGCTG GCGGCGGACC GGGCCGCCCG GCTCGGCTCC GAGACGGACC TCAAGGTGGT CGACACGATC TTCCGCAAGA TGGAAGCGGC CCACTCCAAG CGCAACCCGG ACGAGGAATC CATGCTCGAC GCGGAGTTCC ACCTGGCGAT TGTCGAGGCC AGCCACAACG TGATCATGCT GCACATGATG CGGTCAATGT TCGACCTGCT GCGCGAAGGC GTGTTCTACA ACCGCAAGAT CATGTTCAAG CAGCGCGCCA CACGGGATCA GCTGCTAGAA CAGCACCGGG CGATCAACGC CGCCTTGCAG GCCCGCGATC CCCAGGCCGC GCGGGGGGCG GTGCAGCACC ATCTGGATTT CGTCGAAGGC TCCCTCGCGG ACTGGCGCCA GATGGAAAAG AACGAGGAAA TCGCGCGCCA GCGCTACGAG CACGAACAGG CCCGCTGA
|
Protein sequence | MPFQRIQSEK LSHSVIRQIE QLVLRGILRP GERLPSEREL SEKLGVSRPS LREALAELQT RGLLETRAGA GVFVADVLGS AFSDALIQLF AKHDEAVFDY LAFRRDLEGL AADRAARLGS ETDLKVVDTI FRKMEAAHSK RNPDEESMLD AEFHLAIVEA SHNVIMLHMM RSMFDLLREG VFYNRKIMFK QRATRDQLLE QHRAINAALQ ARDPQAARGA VQHHLDFVEG SLADWRQMEK NEEIARQRYE HEQAR
|
| |