| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3008 |
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| Symbol | |
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| ID | 5710860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3175881 |
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| End bp | 3177611 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641268935 |
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| Product | ABC transporter related |
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| Protein accession | YP_001534342 |
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| Protein GI | 159045548 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.558778 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAC ACGTCCTCGA ACTCACGGAT CTGTCCATCG ACTTCCCCAC GGCCCGCGGG
GTGGTCCATG CGGTCACGAA ACTGTCCCTG AACATCCGCC CCGGCATCCG TGTCGGTTTC
ATCGGGGAAA GCGGGTCGGG CAAGACCACC ACGGCGCTGT CGGTGATGCG CATGCTGGGT
GGGTCGGGCC GGGTGGCCGA GGGGGCAATC CGGCTGGGCG AGACGGATAT CCTCGCGCTC
AGCGAGGAAG AGATGCGCCT GACCCGTCTC AGCCGCGTCA GCTACATCCC CCAAGGGGCG
ATGAACTCCC TCAACCCGAT CATGCGGATC GAGAACCAGA TATGGGACGG CATCGTCGCC
CATGAGGGCA AGACCGACGC CGCCACCCTC AAAGCCCGCT CCAATGCCTG CCTTGAAAGC
GTCGGCCTGC CCGCGCGCAC CGGGCGGCTT TACCCGCATG AGCTGTCGGG CGGCATGAAA
CAACGGGTCT GCATCGCGCT GGGCGTGTCC CTGAACCCCG AACTGATCAT CGCGGACGAG
CCGACCTCGG CGCTGGATGT GGTCACGCAG CGCCACGTGA TGCAGACGCT CAAGGACGTG
CAGGCGCGGA TCGGCTCGGG CCTGATCCTG ATCGGGCATG ACATGGGGCT GATGGCGCAA
TCGGTGGACG AGTTGGCGGT GCTCAAGGAC GGGGTGCTGG TCGAACACGG GACCGTCAAG
CAGATCCTGG AGGCCCCGAA ACACCCCTAC ACCCGCCAGC TGATCTCGTC GGTCCCGCTG
GTGGGCGGGG ACAGCTTCCT CGATCCGCAG GTCGGCGCGC CCCCCGCCCG TCGCGGCAAG
GAAGGTGTGC CGCTGCTGGA GTTCAAATCC GTCTCCAAGA CTTACGGCGA CGTCACCGCC
CTGCACCCCA TGAGCTTCGC GCTGGATGGC GAGACGCCCA AGATCATCTC GATCGTTGGT
CAGTCGGGGT CGGGTAAATC CACCATGGGC AGCCTGATGC TCGGCTTCAA TCCGCCCTCC
ACCGGGCAGG TCCTGTTCGA AGGCGAAGAC ATCGCCAAAC ACTCCGCCGC CGACCGGCTG
GAATTTCGCA AGAACGTGCA GGCCGTGTTT CAGGATCCCT ATGCCTGCTT CAACCCGTTC
TACCGCGTCG ATCACGCGCT CAAGTTCCCC TACAAGCGCC TCGGCCTCGG CACCTCCGAC
GACGAGATCG AAGCCAAGAT GCTGGAGGCC TGCGAGGCCG TGGGCCTCGA CGGCGCGCTC
ATCCTGCGTC GCTTCCCGCA CGAGCTGTCG GGCGGCCAAC GCCAGCGCCT GATCGTGGCG
CGCGCGCTCA TGCTCTCCCC GAAACTGCTG ATCGCGGACG AGCCGGTCTC GATGGTCGAT
GCGAGCCTGC GCGCCACGAT CCTGAAAAAC ATCTACGACC TGAAGGACCG CTACGGCATC
TCGATCCTCT ACATCACCCA CGACCTCGCC ACCGCCTACC ACGTCAGCGA CTATGTCATG
GTCCTCTACC ACGGCCATGT GGTCGAGGCC GGCCCCCCGA AACAGGTCAT CGGCGACCCG
CAGCACCCTT ACACCCGGAT GCTGATCGAA GCGATCCCAT GGCCCGATGT CAGCCGCGAC
TGGGGCGAGG CGGACGAGGC GTCGGACGCC GCGCGCCTCG CCGAAATCGC CCGCGCGACC
GAAACCGTGA TCCGCGGCGA GATACCCGGC TTCACCCTCG CGGCGGGCTA A
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| Protein sequence | MNKHVLELTD LSIDFPTARG VVHAVTKLSL NIRPGIRVGF IGESGSGKTT TALSVMRMLG
GSGRVAEGAI RLGETDILAL SEEEMRLTRL SRVSYIPQGA MNSLNPIMRI ENQIWDGIVA
HEGKTDAATL KARSNACLES VGLPARTGRL YPHELSGGMK QRVCIALGVS LNPELIIADE
PTSALDVVTQ RHVMQTLKDV QARIGSGLIL IGHDMGLMAQ SVDELAVLKD GVLVEHGTVK
QILEAPKHPY TRQLISSVPL VGGDSFLDPQ VGAPPARRGK EGVPLLEFKS VSKTYGDVTA
LHPMSFALDG ETPKIISIVG QSGSGKSTMG SLMLGFNPPS TGQVLFEGED IAKHSAADRL
EFRKNVQAVF QDPYACFNPF YRVDHALKFP YKRLGLGTSD DEIEAKMLEA CEAVGLDGAL
ILRRFPHELS GGQRQRLIVA RALMLSPKLL IADEPVSMVD ASLRATILKN IYDLKDRYGI
SILYITHDLA TAYHVSDYVM VLYHGHVVEA GPPKQVIGDP QHPYTRMLIE AIPWPDVSRD
WGEADEASDA ARLAEIARAT ETVIRGEIPG FTLAAG
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