| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3006 |
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| Symbol | rpe |
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| ID | 5710858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3171858 |
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| End bp | 3172556 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641268933 |
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| Product | ribulose-phosphate 3-epimerase |
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| Protein accession | YP_001534340 |
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| Protein GI | 159045546 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0036] Pentose-5-phosphate-3-epimerase |
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| TIGRFAM ID | [TIGR01163] ribulose-phosphate 3-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTTTG ACCGTTCCAT CAAGATCGCC CCGTCCATCC TCGCCGCGGA TTTCGCCAAT
TTCGGGGCCG AATGCGCGGC GGTGGAAGCC CAGGGCGCCG ACTGGGTCCA TGTGGATGTG
ATGGACGGCC ATTTCGTGCC CAACATCACC TTCGGTCCTG CGACCTGTGC CGCGATCCGG
CCCCATATCA AGGGGGTGAT GGATGTGCAT CTGATGATTG CGCCGGTGGA CCCCTATATC
GACGCCTTCG CCGATGCGGG TGCGGACGTG ATCACCGCGC ATCTGGAGGC CGGGCCCCAT
ATTCACCGCA CCCTGCAAGC GATCCGCGGG GCCGGGGCCA AGGCGGGGCT CGCGCTCAAC
CCGGGCACCG GGCTCGGGGA TGTGGGCCAT CTGCTGGACA TGGTCGACCT CGTGTGCGTG
ATGACCGTGA ACCCGGGCTT CGGCGGGCAG AAATTCCTCG ACATGTCGGC CAAGATCCGT
GACCTGCGCG CCATGATCGG CGACCGCCCC ATCCATATCG AGATCGACGG AGGTGTGACG
CCCCAGACCG CGCCTCTGGT GGCCAAGGCC GGGGCGGATG TGCTGGTCGC AGGCTCGGCG
GTGTTCAAGG GCGGCTCGGT CGCCGACCCT GCGCCTTATG GGGCCAATAT CGCCGCAATC
CGGGCCGCTG CAGAGGCCGC GACCGGGGTC ATGGCCTGA
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| Protein sequence | MPFDRSIKIA PSILAADFAN FGAECAAVEA QGADWVHVDV MDGHFVPNIT FGPATCAAIR
PHIKGVMDVH LMIAPVDPYI DAFADAGADV ITAHLEAGPH IHRTLQAIRG AGAKAGLALN
PGTGLGDVGH LLDMVDLVCV MTVNPGFGGQ KFLDMSAKIR DLRAMIGDRP IHIEIDGGVT
PQTAPLVAKA GADVLVAGSA VFKGGSVADP APYGANIAAI RAAAEAATGV MA
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