| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2997 |
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| Symbol | pnp |
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| ID | 5710849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3159996 |
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| End bp | 3162131 |
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| Gene Length | 2136 bp |
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| Protein Length | 711 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641268924 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_001534331 |
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| Protein GI | 159045537 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAACC AAGTCAAGAA GACCATGGAA TGGGGGGAAG ATACGCTGAC CCTCGAAACG
GGCAAGATCG CCCGTCAAGC CGATGGCTGC GTCATCGCCA CCTATGGCGA GACCTCCGTG
ATGGCCGCAG TGACTTACGC GCGGTCGCAA AAGCCGGGGC AGGATTTCTT CCCGCTGACC
GTGCATTACA ACGAGAAATA CTATGCGGCC GGCAAGATCC CCGGCGGCTT CTTCAAGCGC
GAGGCGCGCC CGACCGAGAA AGAGACGCTG ACCAGCCGTC TGATCGACCG GCCGATCCGC
CCGCTGTTCG TGGACGGGTT CAAGAACGAG GTGCTGGTGA TCTGCACCGT GCTGTCCCAC
GACCTGGAAA ACGATCCCGA CATCGTGGCG ATGATCGCGG CCTCGGCGGC GCTGACCATT
TCGGGCGTGC CCTTCATGGG CCCGATTGCC GGGGCACGCG TGGGCTACGA GGATGGCGAG
TATGTCCTGA ACCCGGTCGT GGACGACATG CACGACCTGC GCAACAATCC CGACCAGCGT
CTCGACCTGG TGGTTGCGGG CACCAAGGAC GCGGTGATGA TGGTCGAATC GGAGGCTTAT
GAGCTGTCCG AGGCTGAAAT GCTGGGCGCG GTGAAGTTCG GGCACGAGCA GATGCAGCCG
GTCATCGACC TGATTATCGA GCTGGCCGAG ACCGCGGCGA AAGAGCCGTT CGATTTCCAG
CCCGCCGATT ACTCGGAACT CTATGCCAAG GTCAAAGCGG CTGGCGAAGA CCAGATGCGC
GCCGCCTTCG CGATCACCGA CAAGCAGGAG CGGGTCACCG CGATCTCTGC GGCCCGCGAC
GCGATCCTCG CCACACTGAG CGACGAAGAG CAGACCGATC CGAACCTCGG CTCCGCCCTG
AAGAAGCTGG AATCCAGCAT CCTGCGCGGT GACGTGGTCA AGAACGGGCG CCGGATCGAC
GGGCGCGCGC TGGACACGGT GCGTCCGATC CAGTCCGAAG TGGGCATCCT GCCCCGGACC
CACGGCTCGG CGCTGTTCAC GCGCGGCGAA ACGCAGGGCC TGGTCGTGAC CACGCTGGGC
ACCGGCGATG ACGAGCAGTT CATCGACGCG CTGCATGGCA ACTTCAAATC CAACTTCCTG
CTGCACTACA ACTTCCCGCC CTACTCGGTC GGCGAAGTGG GCCGCTTCGG TCCTCCGGGA
CGGCGCGAGA TCGGCCACGG CAAGCTCGCA TGGCGCGCTT TGCAGGCGGT TCTGCCCGCG
GCGACGGACT TCCCCTACAC CATTCGTCTG GTGTCCGAGA TCACCGAATC CAACGGCTCG
TCCTCGATGG CATCGGTCTG TGGCGGGTCG CTGTCCATGA TGGATGCGGG CGTTCCGCTG
AAGGCCCCCG TGGCCGGTGT GGCCATGGGT CTGATCCTCG AAGAGGACGG CTCCTACGCG
GTGCTGACCG ACATCCTGGG CGACGAGGAT CACCTCGGTG ACATGGACTT CAAGGTCGCT
GGCACCGAAG AGGGCATCAC CTCGCTGCAG ATGGACATCA AGGTCGCGGG CATCACGCCC
GAGATCATGG AGAAGGCGCT GGAGCAGGCG AAAGCCGGGC GTCTGCATAT CCTGGGCGAG
ATGTCCAAGG CGCTGAGCGA GGGCCGCTCG CAGTTCTCGG AACATGCCCC GCGCATCGAG
ACCATGCAGA TCCCGACCGA CAAGATCCGC GAAGTCATCG GCTCCGGCGG CAAGGTCATC
CGCGAGATCG TGGAGACCTC GGGCGCGAAA GTGGACATCA ACGACGATGG CATCATCAAG
ATCGCGTCCG CTAATGGCGA GGCGATCAAG AAGGCCTACG AGATGATCCA TTCGATCGTG
GCCGAGCCCG AAGAGGGCAA GGTCTATACC GGGACCGTGG TGAAGATCGT CGATTTCGGC
GCCTTCGTGA ACTTCTTCGG CAAGCGTGAC GGGCTGGTGC ATGTCAGCCA GATCGAAAAC
CGCCGCCTGA ACCATCCTTC GGACGTTCTG AAGGAAGGCC AGGAGGTGAA GGTCAAGCTT
TTGGGCTTCG ACGATCGCGG CAAGGTGCGC CTGTCGATGA AAGTCGTGGA TCAGGAGACC
GGCGAAGAGA TCAAGAAAGA AGCGCCTGCC GACTGA
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| Protein sequence | MFNQVKKTME WGEDTLTLET GKIARQADGC VIATYGETSV MAAVTYARSQ KPGQDFFPLT
VHYNEKYYAA GKIPGGFFKR EARPTEKETL TSRLIDRPIR PLFVDGFKNE VLVICTVLSH
DLENDPDIVA MIAASAALTI SGVPFMGPIA GARVGYEDGE YVLNPVVDDM HDLRNNPDQR
LDLVVAGTKD AVMMVESEAY ELSEAEMLGA VKFGHEQMQP VIDLIIELAE TAAKEPFDFQ
PADYSELYAK VKAAGEDQMR AAFAITDKQE RVTAISAARD AILATLSDEE QTDPNLGSAL
KKLESSILRG DVVKNGRRID GRALDTVRPI QSEVGILPRT HGSALFTRGE TQGLVVTTLG
TGDDEQFIDA LHGNFKSNFL LHYNFPPYSV GEVGRFGPPG RREIGHGKLA WRALQAVLPA
ATDFPYTIRL VSEITESNGS SSMASVCGGS LSMMDAGVPL KAPVAGVAMG LILEEDGSYA
VLTDILGDED HLGDMDFKVA GTEEGITSLQ MDIKVAGITP EIMEKALEQA KAGRLHILGE
MSKALSEGRS QFSEHAPRIE TMQIPTDKIR EVIGSGGKVI REIVETSGAK VDINDDGIIK
IASANGEAIK KAYEMIHSIV AEPEEGKVYT GTVVKIVDFG AFVNFFGKRD GLVHVSQIEN
RRLNHPSDVL KEGQEVKVKL LGFDDRGKVR LSMKVVDQET GEEIKKEAPA D
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