| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2949 |
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| Symbol | |
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| ID | 5710800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3109029 |
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| End bp | 3111326 |
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| Gene Length | 2298 bp |
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| Protein Length | 765 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641268875 |
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| Product | putative Vitamin B12-dependent ribonucleotide reductase |
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| Protein accession | YP_001534283 |
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| Protein GI | 159045489 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
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| TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00955068 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACACGCT TTTCCGCGCC GATCTCGGAG TCGATCTGGG ACATGAAATA CCGCTTCAAG
GAGGCGGATG GGACGCCCAT CGACGTGACG GTCGAGGACA GCTGGCGCCG GATCGCCCGG
GCGCTTGCCT CTGTCGAGTC GGACCCGGCA GCATGGGAGC CGAAGTTCTA CGCCGCCCTG
GAGGATTTCA AGTTCCTGCC CGCGGGCCGG ATCACCGCCG GCGCGGGGAC CGAGCGGTCG
GTGACCCTGT TCAACTGTTT CGTCATGGGC ACGGTGCCGG ACGACATGGG CGGGATCTTC
GAGGGGCTGA AAGAGGCCGC CCTGACCATG CAGCAGGGCG GCGGCATCGG CTACGATTTC
TCGACGATCC GGCCCAAGGG CGCGGCGGTC AAGGGCGTGG CGGCGGATGC CTCGGGGCCG
CTGTCCTTCA TGGATGTGTG GGACGCCATG TGCCGGACGA TCATGTCCGC GGGCTCGCGG
CGCGGGGCGA TGATGGCCAC CATGCGCTGC GACCACCCGG ATATCGAGGC GTTCATCGCC
GCCAAATCCG ACCCGGCGCG GCTGCGGATG TTCAATGTCA GCGTGCTGGT CACCGACGCG
TTCATGGAGG CGGTGAAGGC CGACGGCTCC TGGGACCTGG TGTTCGACGG CAAGGTCTAT
CACACGGTCG AGGCCCGCGA CCTGTGGAAC AAGATCATGA AGGCGACCTT CGAGTATGCC
GAGCCCGGGG TGATCTTCAT CGACCGGATC AATGCGGCCA ACAACCTGAG CTATTGCGAG
ACCATCGCGG CGACGAACCC CTGCGGCGAG CAGCCGCTGC CGCCCTATGG CGCCTGCCTT
CTGGGGTCAA TCAACCTTTC GCGGCTGATC TCGGATCCGT TCGGGGAAGG CGCGGCACTG
GACGAGGCGG CGCTGGAGGA GTTGGTCGCC ACCGCAGTGC GAATGATGGA CAACGTGGTC
GATGCCTCCC GCTTCCCGCT GGAGGCGCAG GCCGCCGAGG CCCGCGCCAA GCGCCGGATC
GGGCTGGGGG TCACGGGGTT GGCCGACGCG CTTCTGATGG TGGGGCTGCG CTATGGCTCC
GAGGCAGCGG CGCGTCAGAC CGAGCGCTGG TTGCACCGGA TCGCCCGCGC CGCGTACCTG
GCGTCGGTGC AACTGGCGAC CGAAAAGGGC GCCTTTCCGC TCTTCGAGGC CGACGCCTAT
CTGCAGTCAG GCACGATGCA GACCATGGAC GCCGACGTGC GCGCCGCGAT TGCCGAGCAC
GGGATCCGCA ACGCCCTGCT GACCTCGATC GCGCCCACCG GCACGATCAG CCTCTATGCC
GGCAACGTGT CCTCGGGGAT CGAGCCGGTC TTTGCCTACA GCTACACCCG CAAGGTGCTG
CAAAAAGACG GCTCGCGCAC CGAGGAAGAG GTGGTGGATT ACGCCGTCCA GCTCTGGCGC
GAGAAGTTCG GCGATGCGGA CCTGCCAGAC CACTTCGTCA ACGCCCAGAC CCTGGCCCCG
CTCGACCACG TCCGGATGCA GGCGGCGGCG CAGAAATGGG TCGATTCGAG CATTTCCAAG
ACGATCAACT GCCCCGAGGA TATCAGCTTC GCCGAGTTCA AGGACGTCTA CATGGCCGCC
TGGGACCAGG GCTGCAAGGG CTGCACGACC TACCGCCCGA ACGCCGTGAC GGGCTCGGTG
CTGAGCGTGT CGGACAGCGC CACCAAGGAC AGCGAGGCGG AAAAGGGCGA GGTCAAGCCG
GTCTCCGAGG CGCGCCTCGA CGGCGACGTG GTCTATATCT CCGAGCCGCT CGACCGGCCC
AAGGCGCTGG AGGGGCAGAC CTACAAGCTC AAATGGCCGC TGACGGACCA CGCGATCTAC
ATCACCATCA ACGACGTGAT CATCAACGGC CATCGCCGCC CGTTCGAGGT GTTCATCAAC
TCCAAGAACA TGGAGCATTT CGCCTGGACC GTGGCGCTCA CGCGGATGAT CTCGGCGGTG
TTCCGGCGCG GGGGCGACGT GTCCTTCGTG GTCGAAGAGC TCAAGGCCGT GTTCGACCCA
CGCGGCGGCG CCTGGATGGA AGGCAAGTAT GTCCCCTCCA TCCTCGCGGC CATCGGCGGG
GTGATCGAGC GGCACATGAT CGCCACGGGG TTTCTCGAAG GCGAGGGGAT GGGCCTGAAG
ACCGACCCCC AGGCCGAGGT GATGGCCGTC GGCGAGGCGC CGCGCGGCCC GGCCTGCGCG
AACTGCGGCA GCCATGCCCT GCGCATGATC GAGGGATGCA ACACCTGCGC CGATTGCGGC
TTCTCCAAAT GCGGCTGA
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| Protein sequence | MTRFSAPISE SIWDMKYRFK EADGTPIDVT VEDSWRRIAR ALASVESDPA AWEPKFYAAL
EDFKFLPAGR ITAGAGTERS VTLFNCFVMG TVPDDMGGIF EGLKEAALTM QQGGGIGYDF
STIRPKGAAV KGVAADASGP LSFMDVWDAM CRTIMSAGSR RGAMMATMRC DHPDIEAFIA
AKSDPARLRM FNVSVLVTDA FMEAVKADGS WDLVFDGKVY HTVEARDLWN KIMKATFEYA
EPGVIFIDRI NAANNLSYCE TIAATNPCGE QPLPPYGACL LGSINLSRLI SDPFGEGAAL
DEAALEELVA TAVRMMDNVV DASRFPLEAQ AAEARAKRRI GLGVTGLADA LLMVGLRYGS
EAAARQTERW LHRIARAAYL ASVQLATEKG AFPLFEADAY LQSGTMQTMD ADVRAAIAEH
GIRNALLTSI APTGTISLYA GNVSSGIEPV FAYSYTRKVL QKDGSRTEEE VVDYAVQLWR
EKFGDADLPD HFVNAQTLAP LDHVRMQAAA QKWVDSSISK TINCPEDISF AEFKDVYMAA
WDQGCKGCTT YRPNAVTGSV LSVSDSATKD SEAEKGEVKP VSEARLDGDV VYISEPLDRP
KALEGQTYKL KWPLTDHAIY ITINDVIING HRRPFEVFIN SKNMEHFAWT VALTRMISAV
FRRGGDVSFV VEELKAVFDP RGGAWMEGKY VPSILAAIGG VIERHMIATG FLEGEGMGLK
TDPQAEVMAV GEAPRGPACA NCGSHALRMI EGCNTCADCG FSKCG
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