| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2948 |
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| Symbol | rpsD |
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| ID | 5710799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3108054 |
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| End bp | 3108674 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641268874 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_001534282 |
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| Protein GI | 159045488 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0134327 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCAAAC GCACGTCTGC CAAGTACAAG ATCGACCGCC GCATGGGCGA AAACATCTGG
GGCCGTCCGA AATCCCCGGT GAACCGCCGC GAATACGGCC CCGGCCAGCA CGGCCAGCGC
CGCAAGCAGA AGATGTCCGA CTTCGGCCTG CAGCTGCGCG CCAAGCAGAA GCTCAAGGGC
TATTACGGCG ACCTGACCGA AAAGCAGTTC CGCCGCATCT ATGCCGAGGC CGAGCGGGTC
AAGGGCGACA CCGGCGAGAA CCTCATCGGT CTGCTGGAGC GTCGCCTCGA CGCCGTGGTC
TATCGCGCCA AGTTCGTGCC CACCGTGTTC GCCGCGCGCC AGTTCGTGAA CCACGGCCAC
GTCCTCGTGA ACGGCGAGCG GGTGAACATC CCCTCCTACC GGGTCAAGGA AGGCGACGTC
ATCGAGGTGC GCGAGAAGTC CCGCCAGATG GCCGCCCTGC TCGAGGCGAC CCAGCTGCCC
GAGCGCGACG TGCCCGACTA TGTCGATGCC GACCACAACA AGATGAAAGC GACCTTCGTC
CGCACACCGG GCCTTGCGGA TGTGCCCTAT CCGGTGATGA TGGAACCGAA CCTCGTGATC
GAATACTACG CACAGAACTG A
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| Protein sequence | MTKRTSAKYK IDRRMGENIW GRPKSPVNRR EYGPGQHGQR RKQKMSDFGL QLRAKQKLKG
YYGDLTEKQF RRIYAEAERV KGDTGENLIG LLERRLDAVV YRAKFVPTVF AARQFVNHGH
VLVNGERVNI PSYRVKEGDV IEVREKSRQM AALLEATQLP ERDVPDYVDA DHNKMKATFV
RTPGLADVPY PVMMEPNLVI EYYAQN
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