| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2947 |
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| Symbol | hss |
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| ID | 5710798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3106547 |
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| End bp | 3107965 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641268873 |
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| Product | homospermidine synthase |
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| Protein accession | YP_001534281 |
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| Protein GI | 159045487 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG5310] Homospermidine synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0190455 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATT ATCCGATTTA CGGCCGCATC GACGGCCCGC TGGTGATGAT CGGTTACGGC
TCCATCGGGC GGGGGACGCT GCCGCTGATC GAGCGGCATT TCGACTTCGA CCGGGACCAG
CTCCTGGTGG TGGAGCCCAA GCCGGAGCGG GTGGAATTGC TCAGGTCCCG GGGCATTCCC
TGCAAGCAGC TGGCCCTGAC GCCCGAGAAT TACCGCGACG AGCTGAGCGC GCTCTTCCCC
GACGGCAAGG GGTTCTGCGT GAACCTGTCG GTGGATACCT CCTCGCTCGA CCTGATGAAG
CACTGCCGCG CGCTCGGTGT GCTCTATATC GACACCGTGG CGGAACCCTG GGCCGGCTGG
TATTTCGAGA CCGCCGACAA CGCCGCGCGC ACCAACTACG CCCTGCGCCA GGCGGTGCGG
GACGAGAAGG CCGCGAACCC CGGCGGGACC ACCGCCGTGT CCTGCTGCGG GGCCAACCCG
GGCATGGTGT CCTGGTTCGT CAAGGCCGGG CTGATGAAGC TGGCCGAGGA TCTGGGCCAC
GGGACCCAGG CCCCGAGCAC CCGCGAGGGC TGGGCCGCGC TGATGCGCGA TCTGGGCGTC
AAGGGCGTCC ATATCGCTGA GCGCGACACC CAGGTCCGCG CCGAGCCCAA GCCGCACATG
GTCTTCGTGA ACACCTGGTC GGTCGAGGGG TTCATCGCCG AAGGCTACCA GCCGTCGGAA
ATGGGCTGGG GCACGTTCGA GCCCTGGATG CCCGAGAACG CCCATCGCCA CGAGACCGGC
TGCAAGGCGG CGATCTGGCT CGAACAGCCC GGCGCCGACA CCCGGGTGCG CAGCTGGTGC
CCGACGCGCG GGCCGCAATT CGGCTTTCTC GTGACCCATA ACGAGGCGAT CTCGATTGCC
GATTACTACA CCGTGGGCGC GGGGGATCAC CCCGAGTTCC GGCCGACCTG CCATTATGCC
TACCATCCCT GCGACGACGC GGTGCTGTCG CTGCACGAGA TGTTCGGCTC GGGCGAGATC
CAGACAGAGC ATCACATCAT GGATGTGGAC GAGATCACCG ACGGGATCGA CGAGTTGGGC
GTGCTGCTCT ACGGGCACGC GAAGAACGCG CTGTGGTACG GCTCGCGCCT GTCCAACGAG
GAAACCAGGT CGCTCGCGCC GGACCAGAAC GCCACCGGGT TGCAGGTGAC CTCCGCCGTG
CTCGCGGGCA TGGTCTGGGC GCTGGAGAAC CCGCGCGCGG GCATCGTCGA GACCGACGAG
ATGGACCATG CCCGCTGCCT GGAGGTGCAG TTGCCCTATC TCGGCCCGGT CGAGGGGCAT
TACACCGACT GGACGCCGCT CACCGACCGC GACAGCCCGT TCCCCGAGGA CCTCGCGCTC
GACGAGCCCT GGGCGCTGCA GAACACCCTG GCGCGGTAG
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| Protein sequence | MTDYPIYGRI DGPLVMIGYG SIGRGTLPLI ERHFDFDRDQ LLVVEPKPER VELLRSRGIP
CKQLALTPEN YRDELSALFP DGKGFCVNLS VDTSSLDLMK HCRALGVLYI DTVAEPWAGW
YFETADNAAR TNYALRQAVR DEKAANPGGT TAVSCCGANP GMVSWFVKAG LMKLAEDLGH
GTQAPSTREG WAALMRDLGV KGVHIAERDT QVRAEPKPHM VFVNTWSVEG FIAEGYQPSE
MGWGTFEPWM PENAHRHETG CKAAIWLEQP GADTRVRSWC PTRGPQFGFL VTHNEAISIA
DYYTVGAGDH PEFRPTCHYA YHPCDDAVLS LHEMFGSGEI QTEHHIMDVD EITDGIDELG
VLLYGHAKNA LWYGSRLSNE ETRSLAPDQN ATGLQVTSAV LAGMVWALEN PRAGIVETDE
MDHARCLEVQ LPYLGPVEGH YTDWTPLTDR DSPFPEDLAL DEPWALQNTL AR
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