| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2942 |
|---|
| Symbol | |
|---|
| ID | 5710793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3102031 |
|---|
| End bp | 3102573 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641268868 |
|---|
| Product | putative cation transport protein |
|---|
| Protein accession | YP_001534276 |
|---|
| Protein GI | 159045482 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3703] Uncharacterized protein involved in cation transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.0771654 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACGC CCCTGTGGGT CTTCGGATAC GGATCGCTGA TCTGGAACCC GGAATTTCCC
GTCGCCGAGC AGCAGATCGC CCGGCTGGAC GGCTGGCACC GGTCGTTCTG CATGCGCTCT
ATCCACCACC GCGGGACCGA GACCGATCCG GGGCTGGTCC TGGCGCTGGA CGCGGCGGGG
CAGGGGCATT GCAACGGCGT CGCCTTCCGC GTGGCGCCGG GGGCCGAGGC GCAGACCATG
GCGGATTTGC GAGAGCGGGA GCTGGTCTCG TCGGCCTATC TCGAGATCAC CAGCGAGCTG
ATCCTCCATG ACGGGCGCGC GGTGCGGGCG GTCACGTATG TGGTGGACCG CGATCACGTG
CAGTATTGCG GCGACCTGGC CCTGGAGGAG CAGGCCCGCA TCATCGCGCG CGCCGTGGGT
GGGCGCGGGC CGAACACCGA GTACCTGTGG AATACCGAGG CGCATCTGCG CGAGATCGGG
CTGCATGACC CGGATCTCGC CTGGCTGGCG GAGCGTGTGC GGGAGTTGAC CGACCCGGTC
TGA
|
|---|
| Protein sequence | MNTPLWVFGY GSLIWNPEFP VAEQQIARLD GWHRSFCMRS IHHRGTETDP GLVLALDAAG
QGHCNGVAFR VAPGAEAQTM ADLRERELVS SAYLEITSEL ILHDGRAVRA VTYVVDRDHV
QYCGDLALEE QARIIARAVG GRGPNTEYLW NTEAHLREIG LHDPDLAWLA ERVRELTDPV
|
|---|
| |