| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2940 |
|---|
| Symbol | |
|---|
| ID | 5710791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3098707 |
|---|
| End bp | 3100653 |
|---|
| Gene Length | 1947 bp |
|---|
| Protein Length | 648 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641268866 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001534274 |
|---|
| Protein GI | 159045480 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG1360] Flagellar motor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0783557 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTTG TGCGACGCTT CAACCAGCGC GCGACGGGCA ATATCTGGCC CGGCTTCGTC
GATGCGATGA CGGCGCTGCT GCTGGTGCTG TTCTTCGTGC TGACGATCTT CATGGTGATG
CAATCGGTGC TGAGTGAGCA GATCGAGGTC AAGGATGACG AGCTCGACAG CCTGAGCCTG
CAACTGTCGG ACCTCGCCGA TGCGCTGGGG TTGGAGCGGG AGCGGACCGA GACCCTGACC
GAGACCGTGG GCGCCTTGTC GGCCACGCTC GACGATGCCG AAGCCCAGGC CCGGGCGCAG
GAAACGATGA TCGCCACGCT CACCGCGCAG GTCGCCACCG CCGAGGCGGA GATCGCCGAG
CGCGACGCGC GGATTTCGGG GTTCGAGGAC CGGGTGGCGG CCCTGCTGGC GGACAATCGC
AGTCTCGGCG CGCAACTGGC AGAGACCGGC GCGGATCGCG ATGCGCTTTC GGCGGAACTG
GCGCAGGTGG AGGCCGCGCG CGATGTGGCC CTAAGCGAGG CGGAGGCGCT GAACCTCGCG
CTCGCGCGGC TGCGCACGGA AGTGGACGCG CAACAGGAGG CTGCCCGCCT TGCTGCCGCC
CGCTCCGACG CGCTGGAGGC GCTGGTGGCG GATCTGCGCA ACGACGCGGC GGCACAGGAG
ACCCGGCTGA GCACCCTGAT GGCGCAGCTG GCGGCGGCTG AAGAGACCGA CGCCAGCCTG
CGCGCGGACC TCGCGGACCT GGAAGCGACC CTCGCGGACC GGGAGGCCGC GCTCGACCAG
GCGGAGCTCG CCCGTCTCGA AGGCCTGGCC CGGCTCGAAG AGTTGCGCGC GCAGGTCGTG
GACCAGGCAG CCGAGCTCGA CGCGGTCGAG GCGGCGCGTC TCGAAGAACT GGCCGCGGCG
GAGGCCCTGC GCGCCCGGCT GGCCGAAAGC GAAGGCGCGC TGTCGGAGGC CGAAGCGGCT
CGCCTGGCGG AGGCGGCGGC GGCCGAGGCC CTGCGCGCGC GGCTGCAAGA CGCGGATGCG
GAGCTGACCG CCATGACACT GGCGCTGGAG GCGCGGCGGC AGGAGGCGGA GGATACGCTG
ACCAAGCTGG CCGCAGCGGA ACTCGCACGC GAGGCGCTGT CGGGCGAGTT GGCGGAGGCG
CGGGCACAGG CCGACACGTT GGATCAGCGG CTGACCGAAG CCGAGCGCGA CCGGCTGTTG
CTGGGCCTGG CGCAGGAGCA GTTGCGCCGG GTGGAGGCCC AGTCGGCGCA GGACGCGCGC
CGGGTCGCCG TGCTCAACGA GCAGGTCGCC GCCCTGCGTA CCCAGCTCAA CAGTCTGCAG
GGGCTTCTTG ACGAGGCGAG TGCGCGCGAT GCCGAAGCGC AGGTACAGAT CGAGGCGCTG
GGGACGGAGC TGAACACCGC CCTGGCCCGG GTCGCCGCCG AACAACGCGC CCGCGCCGAC
CTGGAGGAGG CCGAGCGGCG GCGGCTGGAG GCCGAGGCGC AGGATCTCGC GCGCTATCGC
TCGGAGTTTT TTGGCGAGTT GCGTGATCTG CTCGGCGGTC AGGAGGGCGT CCGGATCGAA
GGCGACCGGT TCGTGTTCTC GTCCTCGGTG CTGTTCGACA CGGGCGAAGT GGCGCTTTCG
CCCCAGGGGC AGGCGGAGGT TGCGAAGGTC GCGGGCATCC TGCGCAGCGT GGCGGACCGC
ATCCCCGAAG GCATCGACTG GGTGCTGCGT GTGGACGGGC ACACCGACAA CGTGCCGGTG
ACGGGCGGTG GCAAATACGC CGATAACTGG GAACTGAGCC AGGGCAGGGC GCTGTCGGTC
GCGCGGTTCC TGATTGAGGA CCAGGGCATC CCGCCTGACC GGCTCGCGCC CACCGGGTTC
GGCGAGTACC AGCCCGTGAG CTTGGAGGAT ACGCCGGAGG GCCGGGCGCT CAACCGCCGA
ATCGAGTTGA AGTTCACCGA GAAATGA
|
|---|
| Protein sequence | MAFVRRFNQR ATGNIWPGFV DAMTALLLVL FFVLTIFMVM QSVLSEQIEV KDDELDSLSL
QLSDLADALG LERERTETLT ETVGALSATL DDAEAQARAQ ETMIATLTAQ VATAEAEIAE
RDARISGFED RVAALLADNR SLGAQLAETG ADRDALSAEL AQVEAARDVA LSEAEALNLA
LARLRTEVDA QQEAARLAAA RSDALEALVA DLRNDAAAQE TRLSTLMAQL AAAEETDASL
RADLADLEAT LADREAALDQ AELARLEGLA RLEELRAQVV DQAAELDAVE AARLEELAAA
EALRARLAES EGALSEAEAA RLAEAAAAEA LRARLQDADA ELTAMTLALE ARRQEAEDTL
TKLAAAELAR EALSGELAEA RAQADTLDQR LTEAERDRLL LGLAQEQLRR VEAQSAQDAR
RVAVLNEQVA ALRTQLNSLQ GLLDEASARD AEAQVQIEAL GTELNTALAR VAAEQRARAD
LEEAERRRLE AEAQDLARYR SEFFGELRDL LGGQEGVRIE GDRFVFSSSV LFDTGEVALS
PQGQAEVAKV AGILRSVADR IPEGIDWVLR VDGHTDNVPV TGGGKYADNW ELSQGRALSV
ARFLIEDQGI PPDRLAPTGF GEYQPVSLED TPEGRALNRR IELKFTEK
|
|---|
| |