| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2939 |
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| Symbol | clpA |
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| ID | 5710790 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3096331 |
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| End bp | 3098658 |
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| Gene Length | 2328 bp |
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| Protein Length | 775 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641268865 |
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| Product | ATP-dependent Clp protease ATP-binding subunit |
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| Protein accession | YP_001534273 |
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| Protein GI | 159045479 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.407521 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.118399 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCTTCGT TTTCGAATAC GCTAGAACAG GCCATCCACA CCGCGCTCGC CCAGGCCAAT
GCGCGTCGTC ATGAACTGGC GACGCTTGAG CATCTGCTTT TGGCGCTGAT CGACGAGCCG
GACGCGGCCA AGGTCATGAA AGCCTGCAAT GTCGACCTGG ACGCCCTGCG CCAGACCCTC
GAGGCTTTCA TCGAGGAAGA TCTCGCAACG CTCGCCACGG ATGTTGAGGG GTCCGAAGCC
GTGCCCACCG CTGCGTTCCA GCGGGTGATC CAGCGCGCCG CGATCCATGT GCAGTCCTCG
GGCCGCCAGG AAGTGACCGG CGCCAATGTG CTGGTCGCGA TCTTCGCGGA ACGCGAGTCC
AATGCCGCGT ATTTCCTGCA GGAACAGGAC ATGACCCGGT ATGACGCGGT GAATTTCATC
GCCCATGGCG TGGCCAAGAA CCCCAGTTTC GGCGAATCCC GGCCCGTGTC GGGCGCGTCG
GACATGGAAG AAGAGGCCAG CGCCAGCACC GATCAGGGCG GGGACGAGAA GGAGTCCGCG
CTTGCAAAGT ACTGCGTGGA CCTGAACGCC AAATCGCGCA AGGGTGACGT CGACCCGCTT
ATCGGGCGCG ACAGCGAGGT GGAGCGCTGT ATCCAGGTGT TGTGCCGTCG GCGCAAGAAT
AACCCGCTTC TGGTGGGCGA TCCCGGCGTG GGCAAGACCG CCATCGCCGA GGGCCTGGCG
CGCAAGATCG TGCAGGGCGA AACGCCCGAG GTGCTGCGCG GTGCCACCAT CTACAGCCTG
GACATGGGGG CGCTGCTGGC GGGCACCCGC TATCGCGGCG ATTTCGAAGA GCGGTTGAAG
GCCGTTGTTA CCGAACTTGA AGACCACCCG GATGCGGTAC TCTTCATCGA CGAGATCCAC
ACGGTGATCG GGGCCGGGGC AACATCCGGC GGGGCGATGG ACGCCTCCAA CCTGCTCAAG
CCCGCGTTGC AGGGCGGCAA GCTGCGCTGC ATGGGCTCGA CCACCTACAA GGAGTTCCGT
CAGCATTTCG AGAAGGATCG CGCGCTGAGC CGCCGGTTCC AGAAGATCGA CGTGACCGAG
CCCTCGGTCG AGGACACGGT GAAGATCCTC AAGGGCCTCA AGCCCTATTT CGAGGATCAC
CATGCGATCA AGTACACCTC CGACGCGATC AAGACCGCGG TGGAGCTGTC GGCGCGCTAT
ATCAACGACC GGAAACTGCC GGACAAGGCC ATCGACGTGA TCGACGAGGC CGGGGCCGCG
CAGCACCTGG TGGCCGAATC CAAGCGCCGC AAGACCATCG GCGCCAAGGA AATCGAGGCC
GTGGTGGCCA AGATCGCCCG CATCCCGCCG AAAAACGTCT CCAAGGACGA TGCGGAGGTG
CTGAAGGATC TCGAGGTCTC GCTCAAGCGC GTGGTCTTCG GCCAGGACAA TGCGATCGAG
GCGCTCAGCT CCGCGATCAA GCTGGCCCGC GCGGGCCTGC GCGAGCCGGA AAAGCCCATC
GGCAACTACC TCTTCGCGGG CCCCACGGGT GTCGGCAAGA CCGAGGTGGC CAAGCAGCTC
TCCAGTACGC TGGGGGTGGA GCTTTTGCGG TTCGACATGT CGGAATACAT GGAGAAACAC
GCGGTCTCGC GCCTGATCGG TGCACCTCCG GGCTATGTCG GGTTCGACCA GGGCGGTCTT
CTGACCGACG GGGTCGACCA GCACCCGCAT TGCGTGCTCC TGCTCGACGA GATCGAGAAG
GCGCACCCGG ATGTCTACAA CATCCTGCTG CAGGTGATGG ATCACGGCAC GCTCACCGAC
CATAACGGGC GGACCGTGGA TTTCCGTAAC GTGATCCTGA TCATGACCTC CAACGCGGGG
GCCGCGGAAC AGGCCAAGGC CGCCATCGGC TTCGGGCGCG ACCGGCGCGA GGGCGAGGAT
ACCGCCGCGA TCGAGCGGAC CTTCACGCCC GAGTTCCGCA ACCGCCTGGA CGCAGTGATC
AGCTTCGCGC CGCTCGGCAA GGAGATCATC ATGCAGGTCG TCGAAAAGTT CGTGCTCCAG
CTCGAAGCAC AACTGCTGGA CCGCAACGTC ACCATCGAGC TGAGCGAGGA AGCGGCGACG
CTGCTCGGCG ACATGGGTTA CGACGACAAG ATGGGCGCCC GCCCCCTGGG CCGCGTGATC
CAAGAGCAGA TCAAGAAGCC GCTGGCGGAA GAGTTGCTCT TCGGCAAGCT GGCCAAGGGC
GGCATCGTCA AGGTCGGCGT GAAGGACGGC AAGATCGATC TGCAGATCGC GCCGATCGGC
GCACCCCGGA TCTCCAGCAA GAAGCCCCCG CTTCTGACCG CGGACTGA
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| Protein sequence | MPSFSNTLEQ AIHTALAQAN ARRHELATLE HLLLALIDEP DAAKVMKACN VDLDALRQTL
EAFIEEDLAT LATDVEGSEA VPTAAFQRVI QRAAIHVQSS GRQEVTGANV LVAIFAERES
NAAYFLQEQD MTRYDAVNFI AHGVAKNPSF GESRPVSGAS DMEEEASAST DQGGDEKESA
LAKYCVDLNA KSRKGDVDPL IGRDSEVERC IQVLCRRRKN NPLLVGDPGV GKTAIAEGLA
RKIVQGETPE VLRGATIYSL DMGALLAGTR YRGDFEERLK AVVTELEDHP DAVLFIDEIH
TVIGAGATSG GAMDASNLLK PALQGGKLRC MGSTTYKEFR QHFEKDRALS RRFQKIDVTE
PSVEDTVKIL KGLKPYFEDH HAIKYTSDAI KTAVELSARY INDRKLPDKA IDVIDEAGAA
QHLVAESKRR KTIGAKEIEA VVAKIARIPP KNVSKDDAEV LKDLEVSLKR VVFGQDNAIE
ALSSAIKLAR AGLREPEKPI GNYLFAGPTG VGKTEVAKQL SSTLGVELLR FDMSEYMEKH
AVSRLIGAPP GYVGFDQGGL LTDGVDQHPH CVLLLDEIEK AHPDVYNILL QVMDHGTLTD
HNGRTVDFRN VILIMTSNAG AAEQAKAAIG FGRDRREGED TAAIERTFTP EFRNRLDAVI
SFAPLGKEII MQVVEKFVLQ LEAQLLDRNV TIELSEEAAT LLGDMGYDDK MGARPLGRVI
QEQIKKPLAE ELLFGKLAKG GIVKVGVKDG KIDLQIAPIG APRISSKKPP LLTAD
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