| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2882 |
|---|
| Symbol | sucD1 |
|---|
| ID | 5710733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3035436 |
|---|
| End bp | 3036317 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641268808 |
|---|
| Product | succinyl-CoA ligase [ADP-forming] subunit alpha |
|---|
| Protein accession | YP_001534216 |
|---|
| Protein GI | 159045422 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0074] Succinyl-CoA synthetase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR01019] succinyl-CoA synthetase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGTAC TTATCGACGA AAACACCAAG GTTATCTGCC AAGGCTTCAC CGGCAGCCAA
GGCACCTTCC ATTCCGAGCA GGCGATCGCC TACGGCACCA AGATGGTCGG CGGGGTGACC
CCGGGCAAGG GCGGCCAGAC CCACCTGAAC CTGCCGGTGT TCAACTCGGT CCACGAGGCC
AAGGCCGTGA CCGAGGCGAA TGCCACCGTG ATCTATGTCC CGCCGCCCTT CGCCGCCGAC
TCGATCCTGG AGGCGATCGA TGCCGAAATG GAAGTGATCG TCTGCATCAC CGAAGGTATC
CCGGTGCTGG ACATGATGAA GGTCAAGCGC GCGCTCGAAG GCTCCGCCAG CCGCCTGATC
GGGCCGAACT GCCCCGGTGT GATCACGCCG GATGCCTGCA AGATCGGCAT CATGCCCGGC
CATATCCACA AGCGCGGCAC CGTGGGCGTG GTCTCGCGCT CCGGCACGTT GACTTACGAG
GCGGTGAAAC AGACCACCGA CGTGGGGCTG GGCCAGTCCA CCTGCGTCGG CATCGGGGGC
GACCCGATCA AGGGGACCGA GCATATCGAC GTGCTGGAAT GGTTCCTTGC CGATGACGAG
ACCGAGAGCA TCATCATGAT CGGCGAGATC GGTGGCTCCG CCGAGGAAGA GGCCGCGCAA
TTCCTCGCCG ACGAGAAGAA GCGCGGCCGC TGGAAGCCCA CCGCGGGCTT CATCGCGGGC
CGCACGGCCC CGCCGGGTCG CCGCATGGGC CATGCAGGCG CAATCGTCGC CGGCGGCAAG
GGCGGCGCCG AGGACAAGAT CGAAGCCATG CAGAGCGCGG GCATCGTGGT GGCAGAGAGC
CCGGCGGGCC TAGGCGAAGC CGTGCTCAAG GCGATCGGCT GA
|
|---|
| Protein sequence | MAVLIDENTK VICQGFTGSQ GTFHSEQAIA YGTKMVGGVT PGKGGQTHLN LPVFNSVHEA
KAVTEANATV IYVPPPFAAD SILEAIDAEM EVIVCITEGI PVLDMMKVKR ALEGSASRLI
GPNCPGVITP DACKIGIMPG HIHKRGTVGV VSRSGTLTYE AVKQTTDVGL GQSTCVGIGG
DPIKGTEHID VLEWFLADDE TESIIMIGEI GGSAEEEAAQ FLADEKKRGR WKPTAGFIAG
RTAPPGRRMG HAGAIVAGGK GGAEDKIEAM QSAGIVVAES PAGLGEAVLK AIG
|
|---|
| |