| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2851 |
|---|
| Symbol | |
|---|
| ID | 5710702 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3008719 |
|---|
| End bp | 3009339 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641268777 |
|---|
| Product | autoinducer synthetase |
|---|
| Protein accession | YP_001534185 |
|---|
| Protein GI | 159045391 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3916] N-acyl-L-homoserine lactone synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGTT TCGTCTATGC CGACCAGCTC GATACCTATC CCCGTCTCCG CGACAGCATG
TTCCGCGACC GGGCGGAGCA GTTCAAGACG CGCCTGCAAT GGGATGTCAC CGTCGATGCC
GACGGGTTCG AGCGCGACGC GTATGACGCG GAAAACCCGA TCTACGTGAT CTACGAGTTG
CCCGATGGCA CCCATGGCGG ATCCATGCGG ATCCTGCCCA CCACCGGGCC GACCATGATC
AACGATCATT TCCTGCACCT GACCGACGGG GTCGCGATCC AGTCGCCCTT CATCTGGGAA
TGCACGCGGT TTTGCCTCTC GCCCAAGGCC GATGGCCGGG TCGCGGGCGC GCTGATGCTG
GCGGGCGCCG AGTTCGGCCT GTCCTCGGGT CTGTCGCACT CGGTCGGCGT GTTCGACGCC
CGGATGACGC TGGTCTACCG GCGCCTGGGC TGGATTCCGG AAATCCTCGG GCAGGAGGGC
GAGGGCCGCA GTGCCGTCGC CGTCGGTCTG TGGTCGATGG ATGCGGATCT GCGCGAGCGG
CTCTCGGCCC GGTCCGGGAT CAGCCGCGAG GTCTCCGCCC ATTGGTACGA ACGCGCGTTT
GGCCCCAGCT TGGCGGCCTG A
|
|---|
| Protein sequence | MIRFVYADQL DTYPRLRDSM FRDRAEQFKT RLQWDVTVDA DGFERDAYDA ENPIYVIYEL
PDGTHGGSMR ILPTTGPTMI NDHFLHLTDG VAIQSPFIWE CTRFCLSPKA DGRVAGALML
AGAEFGLSSG LSHSVGVFDA RMTLVYRRLG WIPEILGQEG EGRSAVAVGL WSMDADLRER
LSARSGISRE VSAHWYERAF GPSLAA
|
|---|
| |