| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2839 |
|---|
| Symbol | |
|---|
| ID | 5710690 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2997347 |
|---|
| End bp | 2997910 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641268765 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001534173 |
|---|
| Protein GI | 159045379 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0694] Thioredoxin-like proteins and domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0061746 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCATTC AGACCGAGTC GACACCGAAC CCCGCCACGC TCAAGTTCCT GCCCGGGCAG
ACCGTGCTGG AAACGGGCAC GGCCGACTTC CCATCCGCCG AGGCCGCCGG ATCCTCGCCG
CTCGCCGGCC GCATCTTCGC GGTCAATGGC GTGACGGCGG TGTTCTTCGG CACCGACTTC
GTCACCGTGA CGAAGGACGA GGGCGTCGAA TGGGACCACA TCAAACCCGC CGTGCTCGGC
GCGGTGATGG AACATTACCA GTCCGGCGAC GCGGTGATGA CCGGCGAGGC CAGCGCACCC
GCGGGCCATG CCGCCCATGA CGGCCCGGAT TCCGAGATCG TCGGACAGAT CAAGGAACTG
CTCGACACCC GCGTGCGTCC CGCCGTGGCC CAGGATGGCG GCGACATCAC CTTCCACGGC
TTCGATCGCG GCATCGTCTA TCTGCACATG CAGGGCGCCT GTGCGGGCTG CCCGTCCTCG
ACCCTGACGC TCAAGATGGG GATCGAGAAC CTGCTGCGCC ACTACATCCC CGAGGTGCTG
GAGGTTCGCC CCGTCGCGGC CTGA
|
|---|
| Protein sequence | MFIQTESTPN PATLKFLPGQ TVLETGTADF PSAEAAGSSP LAGRIFAVNG VTAVFFGTDF
VTVTKDEGVE WDHIKPAVLG AVMEHYQSGD AVMTGEASAP AGHAAHDGPD SEIVGQIKEL
LDTRVRPAVA QDGGDITFHG FDRGIVYLHM QGACAGCPSS TLTLKMGIEN LLRHYIPEVL
EVRPVAA
|
|---|
| |