| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2785 |
|---|
| Symbol | gatA |
|---|
| ID | 5713685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2944803 |
|---|
| End bp | 2946290 |
|---|
| Gene Length | 1488 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641268711 |
|---|
| Product | aspartyl/glutamyl-tRNA amidotransferase subunit A |
|---|
| Protein accession | YP_001534119 |
|---|
| Protein GI | 159045325 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
|---|
| TIGRFAM ID | [TIGR00132] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGAGC TGTCTTCCCT GACCATCGCC GCGGCCCGCG ACAAGCTGCG CGCCCGCGAG
ATCACCGCCA CCGAGTTGAC CGAGGCCTGC CTGGCGGAGG TCGAGGGCGC GGGTGCGCTG
GGCGCGTTCG TGCACAACAC CCCCGACCTG GCCCGCGCCC AGGCCGAGGC GGCGGATGCC
CGGCTTGCGG CCGGAGATGC CCCCGCCATG TGCGGCATCC CGCTGGGGAT CAAGGATCTC
TTCTGCACCA AGGGCGTGCC GTCCCAAGCG GCCTCCGCGA TCCTGGGCGG GTTCAAGCCG
GAATACGAGA GCACCGTGAC CAGCCAGCTC TTCGCGGCCG GTGCCGTGAT GCTGGGCAAG
CTGAACATGG ACGAGTTCGC CATGGGCTCG TCCAACGAGA CCTCGACCTA TGGCAACGCG
GTCAACCCGT GGCGCCGGGG CAACGAGGAC ACGGCCCTGA CCCCGGGGGG CTCCTCCGGA
GGCTCGGCCT CTGCGGTGGC CGCGGACCTT TGTCTGGCGG CCACGGGCAC CGACACCGGC
GGGTCGATCC GCCAGCCTGC GGCCTTCGTC GGGATCACGG GCCTCAAGCC CACCTATGGC
CGCTGCTCGC GCTGGGGGAT CGTGGCGTTC GCCTCGTCGC TGGACCAGGC GGGGCCCATG
ACCAAGGATG TGCGCGACTG TGCGATCATG CTGGGGGCGA TGGCCGGGCA CGACCCCAAG
GATTCGACCT CTGCCGACCT GCCGGTGCCG GATTTCGAGG CGATGCTGAC CGGCGACATT
CGCGGCAAGG TGATCGGCAT TCCCAAGGAA TACCGCATGG ACGGGATGCC CGAGGAGATC
GAGGCGCTCT GGTCCCGCGG CGCCGAGATG CTGCGCGACG CGGGCGCGGA ATTGCGCGAT
ATCACCCTGC CGCACACGAA ATACGCGCTG CCCGCGTATT ACGTGATCGC GCCCGCCGAG
GCGTCGTCGA ACCTGGCGCG CTATGACGGG GTGCGGTTCG GGCATCGGGC CAAGCTCGCC
CAGGGCGACG GCATTACCGA GATGTACGAG AAGACCCGCG CCGAGGGCTT CGGGCACGAG
GTGCAGCGCC GCATCATGAT CGGGACCTAC GTTCTGTCGG CGGGGTTCTA TGATGCCTAT
TATAACCGGG CGCGGAAGGT GCGCGCCCTG ATCAAGCGGG ATTTCGACGA GGTGTTCGCC
GCGGGCGTGG ACGCGATCCT GACGCCCGCC ACGCCCTCGG CGGCCTTCGG GCTGGGCGAG
ATGGCCGAGG CGGACCCGGT ACAGATGTAT CTCAATGACG TGTTCACGGT GACGGTGAAT
CTGGCCGGTC TGCCGGGGAT CGCGGTGCCC GCGGGGCTGG ACAAGCAGGG GCTGCCGCTG
GGCCTGCAAC TGATCGGGCG GCCCTGGGAA GAGGGCGACC TGCTCAACAC GGCCTACGCG
CTGGAGCAGG CGGCGGGCTT TGTGGCAAAG CCGAACCGCT GGTGGTAA
|
|---|
| Protein sequence | MSELSSLTIA AARDKLRARE ITATELTEAC LAEVEGAGAL GAFVHNTPDL ARAQAEAADA
RLAAGDAPAM CGIPLGIKDL FCTKGVPSQA ASAILGGFKP EYESTVTSQL FAAGAVMLGK
LNMDEFAMGS SNETSTYGNA VNPWRRGNED TALTPGGSSG GSASAVAADL CLAATGTDTG
GSIRQPAAFV GITGLKPTYG RCSRWGIVAF ASSLDQAGPM TKDVRDCAIM LGAMAGHDPK
DSTSADLPVP DFEAMLTGDI RGKVIGIPKE YRMDGMPEEI EALWSRGAEM LRDAGAELRD
ITLPHTKYAL PAYYVIAPAE ASSNLARYDG VRFGHRAKLA QGDGITEMYE KTRAEGFGHE
VQRRIMIGTY VLSAGFYDAY YNRARKVRAL IKRDFDEVFA AGVDAILTPA TPSAAFGLGE
MAEADPVQMY LNDVFTVTVN LAGLPGIAVP AGLDKQGLPL GLQLIGRPWE EGDLLNTAYA
LEQAAGFVAK PNRWW
|
|---|
| |