| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2760 |
|---|
| Symbol | |
|---|
| ID | 5713659 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2921376 |
|---|
| End bp | 2922041 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641268685 |
|---|
| Product | putative phosphoglycolate phosphatase |
|---|
| Protein accession | YP_001534094 |
|---|
| Protein GI | 159045300 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0219607 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTATG ACGCGGTGGT GTTCGACCTG GACGGGACGC TGGTCGACAG TGCGCCGGAC
ATGGCGCGGG CGATCAACGG CGTGTTGGCG ACAAGGGGGC GGCGCGCGCT GAGTCTGGCG
GAGGTGATCT CCTTCATCGG GTCGGGCGCA CGGATCCTGG TGCAGCGCAG CCTGCGCGCC
ACGGGCGGGA TCGAGGGCGA AGACGACGCG CTGGCCGAGT TCCTGCGCCG CTACGAGACC
GGGGTGGATC ACGAGACGGC GGTCTATACG GGGGTGATGG AGATGCTGGG GGCGTTGCGG
GCGGCCGGTT TGCCGATGGC GCTGTGCACC AACAAGCCCG AAGCCCCGGC GCGGGATCTG
TCGGCGCGGC TCGGGCTGGG GGGGTTCTTC CCGGTGATCG TGGGTGGTGA CACCCTGCCG
GTGCTGAAGC CCGATCCGGC GCCCTTGCAC CATGCGATCA CGGGGCTGAG CGCCGATCCG
GCGCGGACGC TCTATGTCGG GGACAGCGAG ACGGACTACA AAACCGCGCG GGCCGCACAG
GTGGATTTCG CCTTTGTCGA GGGCGGGTAC CAGAGCCGCC CGATCCCGGA TTTCGCACCG
ACCCATCGGC TGGCGCGTCC TGCGCTGGTG GGCGACCTGG TTCTGTCCGG GGTCGTTACG
CGCTGA
|
|---|
| Protein sequence | MRYDAVVFDL DGTLVDSAPD MARAINGVLA TRGRRALSLA EVISFIGSGA RILVQRSLRA
TGGIEGEDDA LAEFLRRYET GVDHETAVYT GVMEMLGALR AAGLPMALCT NKPEAPARDL
SARLGLGGFF PVIVGGDTLP VLKPDPAPLH HAITGLSADP ARTLYVGDSE TDYKTARAAQ
VDFAFVEGGY QSRPIPDFAP THRLARPALV GDLVLSGVVT R
|
|---|
| |