| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2739 |
|---|
| Symbol | |
|---|
| ID | 5713638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2900734 |
|---|
| End bp | 2901423 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641268664 |
|---|
| Product | putative thiamine pyrophosphokinase |
|---|
| Protein accession | YP_001534073 |
|---|
| Protein GI | 159045279 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1564] Thiamine pyrophosphokinase |
|---|
| TIGRFAM ID | [TIGR01378] thiamine pyrophosphokinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.641586 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0231112 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCAAA ACAATGAAAA CCCGGCCACA TTCGTGACAC ATTTGGGGGC CGGACCGGCG
ACGCCGGAGG TGATTGCGCG GGCGTTGGCG ATCGCACCGA TTCTCGTGGC CGTGGATGGG
GGTGTGGCCC ATGCCGTCGC GACGGGGCAG GTGCCTGCGC GGATCATCGG CGATCTGGAC
AGCCAGCCCG CCGCGCTTCC CGAGGCATTC GCGCAGGTCC CCGTGACCCG GATCGCCGAG
CAGGACAGCA CGGATTTCGA CAAGGCGTTG CGGAGCACCG ACTGCGACCT GAGCGTTGGG
GTCGGGTTCC TGGGCGGGCG CGTGGATCAC GAGTTGGCCT GCCTGCATAG CCTGGCCGTG
CATGCGTCGC GTCGCGTCGT GCTTTTGTCG GAAACCGATG CGGTGACACT GATGCCCCCC
GAGGGGCGGA TGCGCCTGCC GCCGGGCACG CGGCTGTCGC TGTTTCCCCT GGCTCCGGTG
GAGGTGACAA GCGCGGGCGT GCGCTGGCCG CTGGCGGGCG AGGTGCTCGA TCCGCTGCGG
CGGGTCGGAA CCTCCAATGA AACAACGGCC CGAGAGGTCA CTTTCGCAGT CTCGGCGCCC
TGCTGCCTGA TCATCGTGCC GGCCAGCGAG GTGCGGGCCC TGGTCGAGAT GCGGCTGAGT
GCGCCGCCGT GGTCGCGGGA CATGGGCTGA
|
|---|
| Protein sequence | MRQNNENPAT FVTHLGAGPA TPEVIARALA IAPILVAVDG GVAHAVATGQ VPARIIGDLD
SQPAALPEAF AQVPVTRIAE QDSTDFDKAL RSTDCDLSVG VGFLGGRVDH ELACLHSLAV
HASRRVVLLS ETDAVTLMPP EGRMRLPPGT RLSLFPLAPV EVTSAGVRWP LAGEVLDPLR
RVGTSNETTA REVTFAVSAP CCLIIVPASE VRALVEMRLS APPWSRDMG
|
|---|
| |