| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2733 |
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| Symbol | degP |
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| ID | 5713632 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2894377 |
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| End bp | 2895882 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641268658 |
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| Product | protease do precursor |
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| Protein accession | YP_001534067 |
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| Protein GI | 159045273 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0138399 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.054673 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATAGAA CAGACCCTCA GCGACCCCAG GCCCGGATCC TGGCGAAGGT CGCAACGCCC
GCGGGCGTGC CCCGTGCGGC GCAGGCCGCC GCCGGGGCGC TGCTTGCGCT GGCCCTGCTG
CTCGCGCAGA CGCTGATCGT GCAGGCACGT GAAATCCCCG GCAGTTTTGC CGACCTCGCC
GAGCGTGTGA GCCCGGCGGT CGTCAACATC ACAACCTCGA CCAATGTCGC CACCCCGGGC
GGGCCGCAAC CGATGGTGCC CGAGGGCTCG CCCCTCGAAG ACTTCTTCCG CGATTTCATG
GATCGGCAGG AGCAGGATGG TCGCCCCGCA CCCCGGCAGC GGCGCTCCAA CGCGCTCGGC
TCCGGCTTCG TGATCTCCGA GGACGGCTAT ATCGTCACGA ACAATCACGT GATCGAGCAG
GCCGACGAGA TCCTGATCGA GTTCTTCTCC GGTGAAGAGC TGGCGGCAGA GGTCGTCGGC
ACCGACCCCA ACACCGATAT CGCGCTCTTG AAGGTCGAAA GCGACACGCC GCTGCCGTTC
GTCACCTTCG GGGACAGCGA TGCGGCCCGC GTGGGCGATT GGGTGATGGC CGTGGGCAAC
CCGCTGGGCC AGGGTTTCTC GGTCTCGGCC GGGATCGTCT CGGCGCGCAA CCGGGCGCTT
TCGGGCACCT ATGACGATTA CATCCAGACC GACGCGGCGA TCAACCGGGG CAACTCGGGC
GGACCGCTGT TCAACATGGA CGGTGAAGTC ATCGGCGTGA ACACCGCGAT CCTGTCGCCC
AACGGTGGCT CTATCGGGAT CGGTTTTTCC ATGGCAGCCG GTGTCGTGAC CAACGTGGTC
GATCAGCTCA AGGAATTCGG CGAGACCCGC CGCGGCTGGC TGGGCGTGCG CATCCAGGAC
GTGACCGACG ACGTGGCCGA AGCCCTCGGG CTGGAGCAGG CCGCCGGGGC GCTCGTGACC
GATGTGCCGG ACGGCCCGTC GCTCGATGCC GGGATGGAGG CGGGGGACGT GATCCTCACC
TTCGACGGGC GCGACGTGGA GGACACCCGT GAGCTGGTCC AGATCGTCGG CAACACAGCG
GTCGGCAAGG CCGTGCGCGT CGTGGTGTTC CGCGACGGCG CAACCCAGAC CCTGCTGGTG
ACCCTTGGGC GTCGCGAAGA GGCGGAGCGG GCGATCCCGG CTTCCGCGTC TGCGGATGAA
GAGATCCTCG AGAAGGAGAT CATGGGCCTG ACCGTCAGCG AGTTGACCGA TGAGCTGCGC
GAGCAGCTCG GGATCGCGGC GAGCGATACC GGGCTTGTCG TGGCCGATAT CGACGAGACC
TCGGAGGCCT TCGACAAGGG TCTGCGCGCG GGCGATCTCA TCGTCGAGGC CGCACAGGTC
CGTGTGACGA CCATCGAAGA GTTCGAAGAG CGGGTCGAGG CCGCCAAGGA GGCGGGGCGC
AAGTCCATCC TCGTGCTGGT GCGCCGGGAT GGCGACCCCC GTTTCGTGGC CCTTTCGCTG
AGCTGA
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| Protein sequence | MNRTDPQRPQ ARILAKVATP AGVPRAAQAA AGALLALALL LAQTLIVQAR EIPGSFADLA
ERVSPAVVNI TTSTNVATPG GPQPMVPEGS PLEDFFRDFM DRQEQDGRPA PRQRRSNALG
SGFVISEDGY IVTNNHVIEQ ADEILIEFFS GEELAAEVVG TDPNTDIALL KVESDTPLPF
VTFGDSDAAR VGDWVMAVGN PLGQGFSVSA GIVSARNRAL SGTYDDYIQT DAAINRGNSG
GPLFNMDGEV IGVNTAILSP NGGSIGIGFS MAAGVVTNVV DQLKEFGETR RGWLGVRIQD
VTDDVAEALG LEQAAGALVT DVPDGPSLDA GMEAGDVILT FDGRDVEDTR ELVQIVGNTA
VGKAVRVVVF RDGATQTLLV TLGRREEAER AIPASASADE EILEKEIMGL TVSELTDELR
EQLGIAASDT GLVVADIDET SEAFDKGLRA GDLIVEAAQV RVTTIEEFEE RVEAAKEAGR
KSILVLVRRD GDPRFVALSL S
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