Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2708 |
Symbol | |
ID | 5713607 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 2869501 |
End bp | 2871093 |
Gene Length | 1593 bp |
Protein Length | 530 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641268633 |
Product | sensor hybrid histidine kinase |
Protein accession | YP_001534042 |
Protein GI | 159045248 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0784] FOG: CheY-like receiver |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.752029 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCTGAGG CAACGCTCAA GGGGCTTGAC GACCACGCCG CGAACCCGTT CCTCGAGTTC TTCGGCAAGG CGCCTGTACT GATGCATTCT GTGGATCGGG ACGGCGTCAT CGTGGCGATC AGCGCCTATT GGGCGGCCCG GCTCGGCTAC AGCCCCGATG ACATGATCGG CCGGTCGATC ATGGAGTTCA TGGTACCCGA ATCGGCGAAC CGTGCCCGGA CCGAGGTCAT GCCGACCCTG CTGCGGACAT CTTCGGTGGA CAAGATCCGG CACACGTTCC TGCGCCAGGA CGGCACGCCG TTCCACGCCC TTGTCTCGGC CGTGGTGCTG CGCGACGCGG ACGGCGCCTT CCTGCGCACC CTGTCGATTG TCAGTGCCGA TGACGGGACG GACGGGCTGC AGCAGGACCT GCAGGCCGCC CTGATCAGGG CCGAGGATGC CAGCCGCGCC AAGAGCCGGT TCCTGGCCGC CATGAGCCAC GAGATCCGCA CCCCGATGAA CGCCATTCTC GGTTTTGCGC AGCTGTTGCG GCTGTCGGAC CTGGACGAGA AGCGGCGCGG CCATGTGGAT GCGATCATCG CGGCGGGCGG GCAGTTGATG AACCTGCTGA CCGACCTGCT GGATCTGAGC CACATGGAAA CCGGGCGCAT GCGGATCGAA AGCCGCGCGA CGGACCTGAT GCCGCTTTTG GACCAGGTGG CGGACTGGTG GTACAGCTCG GTCAGCGAGA AGGGCCTGAC CCTGCAGGTC GAGATCGACG ACCGGATGCC GGCCCGTGTG CTGACCGACC CGGTGCGGCT GCAACAGGTG CTCAACAACT TCATGGCCAA CGCCCTGCGC TATACCGACC GGGGCACGAT CACCCTGCGT GTGCGGGAAA TCAGCCGCAG CGACAGCTTC TCGCGCCTGC GGCTGGAGGT CGAGGATACC GGGATCGGGA TCTCGGAAGA GCAGCAGGCG TTGCTGTTCC GGCCCTTCGT GCAGATCGAG AGCGATTTCG GCAAGGATCG CGGCGGCTGG GGCCTTGGCC TGTCGATCTG CCACAACATC GCCGCGGCCA TGAGCGCCGA TATCGGCGTG ACCTCGCAGC CCGGCGCGGG CGCGACCTTT CATTTCGAGC TGACGCTGCC GCTGGAGCCC TGCCCCGAGC CGCGCGAGAC CCCACAGCCC CATCCCGCCC GGGCGCCCCG GGGGCCGTCG GCCAAGGTGC TGGTGGCCGA GGACAATCCG CTGAACCAGA ACGTGATGGA GGCGATGCTG CGCGATCTCG GGCACGAGGT GCGCGTGGTC TCCAACGGGT TCGAGGCGGT CGAGGCGATC CTGTCGGAGA GTTTCGACCT GGTGTTGATG GACATCACCA TGCCCGGGCT TGACGGGTTG GGGGCGACGG CGCAGATCCG CACCTCGGGG CCGGAAAAGA GCAAGGTGCC GATCATCGCC TGCACCGCCC ATGTGGGCGG CGACGTGCAG GCGCGCTACC GCGATGCGGG GATCGACGGG TTCCTGCCCA AGCCGGTGGA CCCGCGCGCC CTGGAAGCCG CGATCAACAG CGCCGTCTCG GGCGGCGCCT TCTCGCACGG TCCCGGAACC TAG
|
Protein sequence | MPEATLKGLD DHAANPFLEF FGKAPVLMHS VDRDGVIVAI SAYWAARLGY SPDDMIGRSI MEFMVPESAN RARTEVMPTL LRTSSVDKIR HTFLRQDGTP FHALVSAVVL RDADGAFLRT LSIVSADDGT DGLQQDLQAA LIRAEDASRA KSRFLAAMSH EIRTPMNAIL GFAQLLRLSD LDEKRRGHVD AIIAAGGQLM NLLTDLLDLS HMETGRMRIE SRATDLMPLL DQVADWWYSS VSEKGLTLQV EIDDRMPARV LTDPVRLQQV LNNFMANALR YTDRGTITLR VREISRSDSF SRLRLEVEDT GIGISEEQQA LLFRPFVQIE SDFGKDRGGW GLGLSICHNI AAAMSADIGV TSQPGAGATF HFELTLPLEP CPEPRETPQP HPARAPRGPS AKVLVAEDNP LNQNVMEAML RDLGHEVRVV SNGFEAVEAI LSESFDLVLM DITMPGLDGL GATAQIRTSG PEKSKVPIIA CTAHVGGDVQ ARYRDAGIDG FLPKPVDPRA LEAAINSAVS GGAFSHGPGT
|
| |