| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2705 |
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| Symbol | hemE |
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| ID | 5713604 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2865197 |
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| End bp | 2866231 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641268630 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_001534039 |
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| Protein GI | 159045245 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGACA GAAAAAAACT CCTCCGTTCT CTGGATGGAG AGGTGCAAAA GGTCCCACCC
ATCTGGATGA TGCGCCAGGC GGGGCGGTAT TTGCCCGAAT ATCGCGCCAC GCGGGCGGAG
GCCGGGGATT TTCTGTCGCT GTGCTACAAC TCGGAGCTGG CCGCCGAGGT GACCCTGCAG
CCGATCCGCC GCTACGGGTT CGATGCGGCG ATCCTGTTCG CCGATATCCT GCTGATCCCG
GACGCGCTGG GGGCGGATTT GTGGTTCGTG ACCGGCGAGG GGCCGCGCCT GTCGACCATC
GAGACCATGG AAGAGTTCAA CAAGCTCAAG CCCGCCGACG AGGTCCATGA CCATCTCGCC
CCGATCTACG AGACCGTGCG GATCCTGTCG CGCGAGTTGC CCGCCGAGAC CGCGCTGATC
GGCTTTGCCG GGGCGCCCTG GACCGTGGCG ACCTACATGA TCGCCGGGCG CGGGACGCCC
GACCAGGCCC CGGCGCACAA GCTGATGCGC GAGGCGCCCG AGGTGTTCGA CGCGCTGATG
GACCGGCTGA CCGAGGCGAC CATCGCGTAC CTCTCGATGC AGATCGAGGC GGGGGCCGAG
ACGGTGAAGA TCTTCGACAG CTGGGCCGGG TCGCTGAAGG GCGAGGCGTT CACGAAATAC
GCTCTGGAGC CGACGAAAAA GATCATCGCC GCGCTGAAGA CGAAACATCC CGACACGCCG
ATCATCGCCT TCCCGCGCGA GGCGGGCGAC GGCTATATCG GCTTTGCCAA GGCCACGGGG
GCCGATTGCG TCGCACTGGA CAATTCCGTC TCGGCGGCCT GGGCGGCCGA GCATGTGCAG
GTCGATGGCT GCGTGCAGGG CAACCTGGCC TCGTCGCACA TGGTGACCGG CGGGCAGGCC
CTGGTGGACG AGACCCGCGA GATCGTGCAG GCGTTCTCCA AGGGCCCGCA TATCTTCAAC
CTCGGCCACG GGATCACACC CGATGCGGAC CCCGAGAACG TGCAACTGAT GATCGACACC
GTGCGCAGCG CCTGA
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| Protein sequence | MTDRKKLLRS LDGEVQKVPP IWMMRQAGRY LPEYRATRAE AGDFLSLCYN SELAAEVTLQ
PIRRYGFDAA ILFADILLIP DALGADLWFV TGEGPRLSTI ETMEEFNKLK PADEVHDHLA
PIYETVRILS RELPAETALI GFAGAPWTVA TYMIAGRGTP DQAPAHKLMR EAPEVFDALM
DRLTEATIAY LSMQIEAGAE TVKIFDSWAG SLKGEAFTKY ALEPTKKIIA ALKTKHPDTP
IIAFPREAGD GYIGFAKATG ADCVALDNSV SAAWAAEHVQ VDGCVQGNLA SSHMVTGGQA
LVDETREIVQ AFSKGPHIFN LGHGITPDAD PENVQLMIDT VRSA
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