| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2697 |
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| Symbol | |
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| ID | 5713596 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2857981 |
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| End bp | 2859084 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641268622 |
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| Product | putative high-affinity branched-chain amino acid transport system |
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| Protein accession | YP_001534031 |
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| Protein GI | 159045237 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR03408] urea ABC transporter, permease protein UrtC |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.611923 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCGCC TTGTCGACCG CCGCATGGGC ATCTTCCTGA CCGGCCTCTT CATCCTCACC
GTGGCCATCC CCGCGGGCAA CCTGTGGATG GAGGGCCAGC CCGTCCCCTC CTACATCGTC
AGCCTGCTGG GCAAGTACCT GTGCTATGCG CTGCTCGCCG TCGCGCTGGA CCTTGTCTGG
GGCTACACGG GCATCCTGTC GCTGGGTCAC GGGGCCTTCT TCGCGCTTGG TGGCTACGCC
ATGGGCATGC ACCTGATGCG CGAGATCGGC GACCGCGGCG TCTATGCCAA TCCCGAGTTG
CCCGACTTCA TGGTTTTCCT GAATTATCAG GAGCTTCCAT GGTTCTGGTA CGGGTTCGAC
CAGTTCTGGT TCGCCTGCCT GATGGTGCTT CTGGTACCCG GTGCGCTGGC CTTCGTCTTC
GGCTGGTTCG CCTTCCGCAG CCGGGTGACC GGCGTCTACC TGTCGATCAT CACGCAAGCC
ATGACCTATG CCCTGATGCT GGCGTTCTTC CGCAACGAGA TGGGCTTCGG CGGCAATAAC
GGCCTGACGG ATTTCAAGGA CGTGCTGGGC TTCGATCTGC AATCGGACGC CACCCGCGCG
GGCCTCTTCG TACTCTCGGC CCTGGCGCTG ACGGCGGGGC TGCTGATCTC CAAGGCGATC
ACCAAGTCCA AGCTCGGCCA GATCCTCGTC TGTGTCCGGG ATTCGGAGGC CCGCACGCGG
TTTCTCGGCT ACCGGGTGGA GCGCTACAAG CTCTTCGTCT GGGTAGTCTC GGCGATGATG
GCGGGGGTCG CGGGCGCGCT CTACACACCC CAGGTGGGCA TCATCAACCC CGGCGAGTTC
AGCCCCGCCA ACTCCATCGA GATCGTGATC TGGGTCGCCC TCGGCGGCCG CGGCACCCTC
GTCGGCGCGG CCATCGGCGC CATCCTCGTG GCGGCCGCCA AGACCCTTCT GACGGGCTGG
TTCCCCGAGA TCTGGCTCTT CGCCCTCGGC GCGCTCTTCA TCTTCGTGAC GATCTTCATG
CCCAAGGGCG TGCTGGGCGT CGTCGAGAAC ACCTTGAAAC GCAAGAAGAA ACCAGAGCCG
GAACCGAGGG AGGCAGAGGC ATGA
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| Protein sequence | MTRLVDRRMG IFLTGLFILT VAIPAGNLWM EGQPVPSYIV SLLGKYLCYA LLAVALDLVW
GYTGILSLGH GAFFALGGYA MGMHLMREIG DRGVYANPEL PDFMVFLNYQ ELPWFWYGFD
QFWFACLMVL LVPGALAFVF GWFAFRSRVT GVYLSIITQA MTYALMLAFF RNEMGFGGNN
GLTDFKDVLG FDLQSDATRA GLFVLSALAL TAGLLISKAI TKSKLGQILV CVRDSEARTR
FLGYRVERYK LFVWVVSAMM AGVAGALYTP QVGIINPGEF SPANSIEIVI WVALGGRGTL
VGAAIGAILV AAAKTLLTGW FPEIWLFALG ALFIFVTIFM PKGVLGVVEN TLKRKKKPEP
EPREAEA
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