| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2689 |
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| Symbol | cydB |
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| ID | 5713587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2849767 |
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| End bp | 2850780 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641268613 |
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| Product | cytochrome bd-I oxidase subunit II |
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| Protein accession | YP_001534023 |
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| Protein GI | 159045229 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1294] Cytochrome bd-type quinol oxidase, subunit 2 |
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| TIGRFAM ID | [TIGR00203] cytochrome d oxidase, subunit II (cydB) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00269242 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGCGA TCTTCTCCGA CCCGGCCCAG TGGTTGCCGC TGACCTTTGC CGCCCTCATG
GGGCTCTCGA TCCTGATCTA CGTGGTGCTC GACGGGTTCG ACCTGGGCGT GGGGGTGCTC
TTCCCCTTCG CCGAGGACGC CGAGAAGGAC CGCATGGTCG CCTCCATCGG CCCGTTCTGG
GACGCAAACG AGACCTGGCT GGTGCTGGCC ATCGGCATCC TCCTGGTGGC CTTTCCCGCC
GCCCATGGCG CGATCCTCAC CGCACTCTAC TTGCCCGTGG CGATCATGCT GATCGGGCTG
ATCCTGCGCG GCGTATCCTT CGAGTTTCGC GCCAAGGCCC CGGCCGCCCA GAAACGCGCC
TGGAACAACG CGTTCTTCAT CGGCTCGATG ATGACCTCGC TGAGCCAGGG CTTCATGCTG
GGGCTCTACA TCATGGGCCT GCAATGGACG GTCTGGACCG TGGGCTTCGC CACCCTGACG
GCGGTGTTCC TGACCGTGGC CTATTCCTTC ATCGGTGCGA CCTGGCTGGT TCTGAAGACC
GAAGGCGCGC TGCAACTCAA GGCGGTGGAG TGGTCCAAGG GCGGGATCTG GGGGCTGGTG
CTGGGCCTGG GCGCGGTGTC GCTGGCCTCG CCGCTGGTCA GCCCGCGCAT CTTCGACAAG
TGGTTCTCTT TCCCCGAGAT CGTGCTGCTG GCCCCCCTGC CCTTGATGTT CTGCCTGCTG
ATCGGCCTGC TGTTCGTGGG GCTCAAACGC CTGCCCACCG CCGATGACAG CTTTGCCTGG
CTGCCCTTCG CGGCGACCAT CGTGCTCTTC ATCCTGGCGT TCTTCGGCCT GGCCTACTCG
TTCTACCCCT ACGTGGTGCC CGAGCAGCTG ACGATCTACG AGGCCGCCAG CGCGCCGGAA
AGCCTGCTGA TCATCCTCGT GGGCACGGTC TTCGTGCTCC CGGCGATCCT GGGCTACACG
GTGCTCAGCT ACGTGATCTT CCGCGGCAAG GCGCGCGCGC TCAGCTACGA CTGA
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| Protein sequence | MGAIFSDPAQ WLPLTFAALM GLSILIYVVL DGFDLGVGVL FPFAEDAEKD RMVASIGPFW
DANETWLVLA IGILLVAFPA AHGAILTALY LPVAIMLIGL ILRGVSFEFR AKAPAAQKRA
WNNAFFIGSM MTSLSQGFML GLYIMGLQWT VWTVGFATLT AVFLTVAYSF IGATWLVLKT
EGALQLKAVE WSKGGIWGLV LGLGAVSLAS PLVSPRIFDK WFSFPEIVLL APLPLMFCLL
IGLLFVGLKR LPTADDSFAW LPFAATIVLF ILAFFGLAYS FYPYVVPEQL TIYEAASAPE
SLLIILVGTV FVLPAILGYT VLSYVIFRGK ARALSYD
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