| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2645 |
|---|
| Symbol | proC |
|---|
| ID | 5713543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2801659 |
|---|
| End bp | 2802480 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641268569 |
|---|
| Product | pyrroline-5-carboxylate reductase |
|---|
| Protein accession | YP_001533979 |
|---|
| Protein GI | 159045185 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0345] Pyrroline-5-carboxylate reductase |
|---|
| TIGRFAM ID | [TIGR00112] pyrroline-5-carboxylate reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTCTCG AAGATGTGCG CCGCCGGGGC TTGTTCCTGC TTGGCTGCGG AAAGATGGGG
TCGGCCATGC TGCAGGGCTG GCTGGCACAG GGGATCGCGC CCGGGTCGGT CTGGGTTCTG
GACCCCAAAC CATCCGATTG GCTGACGGGG CTGGCCGCCC AGGGGTTGCA CCTGAACGCG
GGCGTGCCCG AGGCCCCCGC GATCGCGCTG CTGGCGGTCA AGCCGCAGAT GATGGGCGAC
GCGCTGGGCC CGGTGACCGC GCTGGGCGGG GGCGCGACGC TGGTCCTGTC CATCGCGGCG
GGCACCCCGA TCCGGTTTTT CGAGGCGGCC TTCGGACCCG CGACCCCGAT CATCCGTGCC
ATGCCCAACA CCCCCGCGGC CATCGGCAAG GGGATCACGG CGCTGGTCGG CAACGGGGCG
GCCACCGAGG CGCATATGGC CCTGGCCGAG GCGCTGCTCT CGGCCATCGG GCAGACCGTG
CGGCTGGAGG GCGAGCACCA GATGGACGCG GTCACGGCGG TGTCCGGGTC CGGGCCGGCT
TATGTCTTTC ACCTGATCGA GACGCTTGCC GCCGCCGGGG AGGCGGAGGG CCTGCCCCCC
GCGCTTGCCC TGCAACTGGC GCAGGCGACC GTGGCGGGCG CGGGCGCGCT GGCCGAGGCC
GCCGACGAGG GACCTGCGCA GTTGCGGGTC AATGTCACCA GCCCGGGTGG GACCACGGCG
GCGGCGCTGG AGGTGCTGAT GGATGCCGAG ACCGGGTTTC CTCCGCTTTT GCGCCGGGCG
GTGGCGGCGG CGGCGCAGCG CGGGCGGGAG TTGGCGGACT AA
|
|---|
| Protein sequence | MGLEDVRRRG LFLLGCGKMG SAMLQGWLAQ GIAPGSVWVL DPKPSDWLTG LAAQGLHLNA
GVPEAPAIAL LAVKPQMMGD ALGPVTALGG GATLVLSIAA GTPIRFFEAA FGPATPIIRA
MPNTPAAIGK GITALVGNGA ATEAHMALAE ALLSAIGQTV RLEGEHQMDA VTAVSGSGPA
YVFHLIETLA AAGEAEGLPP ALALQLAQAT VAGAGALAEA ADEGPAQLRV NVTSPGGTTA
AALEVLMDAE TGFPPLLRRA VAAAAQRGRE LAD
|
|---|
| |