| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2608 |
|---|
| Symbol | |
|---|
| ID | 5713506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2771502 |
|---|
| End bp | 2772488 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641268532 |
|---|
| Product | putative oxidoreductase |
|---|
| Protein accession | YP_001533942 |
|---|
| Protein GI | 159045148 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0673] Predicted dehydrogenases and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.00170971 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCACAC CACTGCGCTG GGGCATCCTG GGGGCCGCGA AATTTGCGCG TGAGCAAATG
GGCCCCGCCA TCCATGCCGC CAGGGGCGCC ACGCTGGCGG CGCTTGCCAG CCGCGATGCG
GCCAAGGCGG CGCCGTTCCG GGCCTTCGCG CCCGGGCTGC GGGTCCATAC CGATTACGAC
GCGCTGCTGG CGGATCCGGA GGTGGACGCG GTCTATATCC CGCTGCCCCA CCCGATGCAT
GTGCCCTGGG CGATGAAGGC GCTGGAGGCG GGCAAGCATG TGCTCGCCGA GAAGCCGCTG
GCCATGACCG CCGCCGAGAT CGACCCGCTG ATTTCGCGGC GAAACGCGAC CGGGCTGCAC
TGCGCCGAGG CCTACATGAT CGTCCACCAC CCCCAATGGC AGCGGGCGCG CGCCCTGCTG
CGCGAGGGGG CGATCGGGCG GCTGGTGCAT GTGGCGGGGA TCTTCACCTA TGACAACCGG
GCCGATCCCG GCAACATCCG CAACGCGGCC GATCAGGGCG GCGGGGGCAT CCCGGATATC
GGGGTCTATA CCTATGGCTG CACCCGCTGG ATGACCGAGG CCGAGCCCGA GGCGATCACC
CATGCGGATA TCACCTGGGA GAACGGCGTG GACACCATCG CGCGGGTCTC GGCGCGCTTT
CCCGGCTTCA CCGCCCATTG GGTCAACTCC ATGCGGATGG CGCCGTTTCA GGACATGGTG
TTTCATGGCG AAACGGGCGT TCTGCGGCTG ACCGCGCCGT TCAATGCGCA GGTCTTCGGC
GAGGCGCGGG TGGAGCTGCA CCGGCCCGGG GGCGGCGGCG ATCACACGGT CACGGTGGAG
CGGTTTCCGG CTGCCAATCA GTACGTCGCG CAGGTCGAGG CGTTCGGGCG CACGGTGCGG
GAGGGCGCGG AGTATCCCTG GTCCCTGGAG GATGCGCGGG GCACGCAAGC CATGATCGAC
GCGGTCTATG CCGCGGCCAA GGGTTAA
|
|---|
| Protein sequence | MTTPLRWGIL GAAKFAREQM GPAIHAARGA TLAALASRDA AKAAPFRAFA PGLRVHTDYD
ALLADPEVDA VYIPLPHPMH VPWAMKALEA GKHVLAEKPL AMTAAEIDPL ISRRNATGLH
CAEAYMIVHH PQWQRARALL REGAIGRLVH VAGIFTYDNR ADPGNIRNAA DQGGGGIPDI
GVYTYGCTRW MTEAEPEAIT HADITWENGV DTIARVSARF PGFTAHWVNS MRMAPFQDMV
FHGETGVLRL TAPFNAQVFG EARVELHRPG GGGDHTVTVE RFPAANQYVA QVEAFGRTVR
EGAEYPWSLE DARGTQAMID AVYAAAKG
|
|---|
| |