| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2603 |
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| Symbol | |
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| ID | 5713501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2767996 |
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| End bp | 2769831 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641268527 |
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| Product | oligoendopeptidase |
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| Protein accession | YP_001533937 |
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| Protein GI | 159045143 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1164] Oligoendopeptidase F |
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| TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0093862 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCACCCCC TGCCCTTCCC TGCCCCCACG CCCCTCCGCG ACGCCGCCAC CGACACCGGG
GGCAAGAACC TCGGGGCGCT GCCGGACTGG GATCTGTCGG ACCTCTACCC GGCCCCCGAC
GCCCCCGAGA TCAAGCGCGA CATGGACTGG CTGGAGGCCG CCTGTCGCGA CTTCGCCGCC
GATTACGAGG GCAAGCTGGC GGACCTCGAC GCCGCGGGCA TGCTCGACTG CGTGCTGCGC
TACGAGCGGA TCGACACGGT CTCCGGCCGC CTGATGTCCT ACATGGGCCT GCGCTATTAC
CAGAACACCA CCGATGCCGA GCGCGCCAAG GCCATGGCCG ACGCCCAGGA CAAGATCACC
ACCTACACCA CGCCGCTGGT ATTCTACACG CTGGAGATCA ACCGCCTGCC GGACGACCAT
CTCGACGGGC TTTTTGCCGC CAACGCTGAT CTCGCGCGCT ACAAGCCGAT CTTCGACCGC
CTGCGCGCGA TGAAGCCCTA CCAGCTCTCC GACGAGCTGG AAAAGTTCCT CCATGACAGC
TCCACCGTGG GCGCGGCCGC CTGGAACCGG CTCTTCGACG AGACCATCGC CGGCATGATG
TTCGAGGTCG ACGGCGAGGC CTACAATATC GAGGGCACGC TCAACTTCCT GTCCGAGCCG
GAGCGCGACA AGCGCGAGGC CGCTGCCCGC GAGCTCGCCG CCCAGTTCGG CAGCCAGATC
AAGCTCTTCG CCCGCGTCCA CAACACGCTG GCCAAGGAGA AGGAGATCAC CGACCGCTGG
CGCGGCCTGC CCACGCCCCA GGCCGGACGC CACCTCGCCA ACCACGTGGA GCCCGAGGTG
GTCGAGGCCC TGCGCAACGC GGTCGTCGCC GCCTATCCCA AGCTCTCGCA CCGCTACTAC
GCGCTGAAGG CCAAGTGGAT GGGGCTCGAC AAGATGCAGG TCTGGGACCG CAACGCCCCC
CTGCCCCGCG AAGACAATCG CATCGTCGAC TGGGACGAGG CCAAGGCGAC CGTGCTGGAG
GCTTACGCCG ATTTCGACCC GGAAATGGCC CGCATCGCCG AGCCGTTCTT CGACCGCGGC
TGGATCGATG CGGGCGTCAA ACCGGGCAAG GCCCCCGGCG CCTTCGCCCA CCCGACCGTG
GCCGAGGTGC ATCCTTACGT CATGCTCAAC TACCTGGGCA AACCGCGCGA CGTCATGACC
CTCGCGCACG AACTGGGCCA CGGCGTCCAC CAGGTCCTCG CCGCGGGCCA GGGCGAGTTG
CTCAGCTCCA CCCCCCTGAC GCTTGCCGAA ACCGCCAGCG TATTCGGCGA GATGCTGACC
TTCCGCAAAC TGCTCGACGC CGCCCCCGAC AAGGCCACCC GCAAGATCCT GCTCGCCGGC
AAGGTCGAGG ACATGATCAA CACGGTCGTC CGCCAGATCG CCTTCTACGA CTTCGAGTGC
AAGCTGCACG ACGCGCGCAA GGCGGGGGAG CTGACCCCGG ACGAGATCGG CGATCTGTGG
ATGAGCGTGC AGGGCGAAAG CCTCGGCCCC GTCTTCGAGT TCATGGACGG CTACGAGACC
TTCTGGGCCT ACATCCCCCA CTTCGTCCAC TCGCCCTTCT ACGTCTACGC CTATGCCTTC
GGCGACGGGC TGGTGAACGC GCTCTACGCG GTCTACGAAG AAGGCGATCC CGACTTCCGC
ACCAAGTATT TCGACATGCT CAAGGCGGGC GGGTCCAAGC ACCACAAGGA CCTGCTGGAA
CCCTTCGGGC TCGATGCCTC GGACCCGGCC TTCTGGGACA AGGGGCTGAG CATGATCTCC
GGCATGATCG ACGAATTGGA AGCGATGGAG GACTGA
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| Protein sequence | MHPLPFPAPT PLRDAATDTG GKNLGALPDW DLSDLYPAPD APEIKRDMDW LEAACRDFAA
DYEGKLADLD AAGMLDCVLR YERIDTVSGR LMSYMGLRYY QNTTDAERAK AMADAQDKIT
TYTTPLVFYT LEINRLPDDH LDGLFAANAD LARYKPIFDR LRAMKPYQLS DELEKFLHDS
STVGAAAWNR LFDETIAGMM FEVDGEAYNI EGTLNFLSEP ERDKREAAAR ELAAQFGSQI
KLFARVHNTL AKEKEITDRW RGLPTPQAGR HLANHVEPEV VEALRNAVVA AYPKLSHRYY
ALKAKWMGLD KMQVWDRNAP LPREDNRIVD WDEAKATVLE AYADFDPEMA RIAEPFFDRG
WIDAGVKPGK APGAFAHPTV AEVHPYVMLN YLGKPRDVMT LAHELGHGVH QVLAAGQGEL
LSSTPLTLAE TASVFGEMLT FRKLLDAAPD KATRKILLAG KVEDMINTVV RQIAFYDFEC
KLHDARKAGE LTPDEIGDLW MSVQGESLGP VFEFMDGYET FWAYIPHFVH SPFYVYAYAF
GDGLVNALYA VYEEGDPDFR TKYFDMLKAG GSKHHKDLLE PFGLDASDPA FWDKGLSMIS
GMIDELEAME D
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