Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2589 |
Symbol | |
ID | 5713487 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 2754445 |
End bp | 2756049 |
Gene Length | 1605 bp |
Protein Length | 534 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641268513 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_001533923 |
Protein GI | 159045129 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.00328254 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGAAGGACT TCGCCGCGCT CTTCACCTCC CTCGACCAGA CCACGAAGAT CACGCCCAAG GTCGCCGCCC TCGCCGCCTA TTTCCGCACC GCCCCCGAGG AGGACCGCCT CTGGACCATC GCGCTCCTGT CCGGCCGCCG CCCCAAGCGC ACCGTGACCA CCACCCGCCT GCGCGAATGG GCGGCCGAGC GCGCGGGCAT CCCCCTGTGG CTCTTCGAAG AGGCCTACCC GGTCGTCGGC GATCTGGCCG AAACCATCGC CCTCGTCCTG CCGCCCCCCA CCCGCACCAG CACCCGCTCG CTCACCGACT GGATCACCAC CATCCGCGGC CTCGCCGCCC GCGACGAACC CGACCGCCGC GCCGAAATCC TCGCGGCCTG GGACAGCCTG CCCGAGACCG AACGCTTCGT GTTCAACAAG CTCATCACCG GCGGCTTCCG CATGGGCGTG TCGGCCAAGC TGATGACGCG CGCCCTGTCG CAGGCCACCG ACATTCCCGA ACCCGAACTG GCCCACCGCC TCATGGGCGA CTGGACGCCG GAGACCACCA GCTTCCAATC CCTCGTGCTC ACCCGCGACC CGGCGGCGGA CCTGTCCAAA CCCTATCCGT TCTACCTCGC CTACGGGCTG GAGGATCCGC CCGACACCCT CGGCCCCCCC GCCGACTGGC AGGCGGAGCA CAAATGGGAC GGCATCCGCG GCCAGCTCAT CCTGCGCGGC GGCCAGCACT TCGTCTGGTC CCGGGGCGAA GAGCTGATGA CCGACCGCTT CCCCGAGCTT GCCGCCCTGC GCGACTTCCT CCCCGACGGC ACCGTGCTCG ACGGCGAACT GCTCGCCTGG GATTACAACG GCGCGGGCGA CGCCCCCCTG CCATTCAACG CCCTGCAAAA ACGCATCGGC CGCAAGACCG TGCCCAAAAA ACTCCTGTCC GAGGCCCCGG TGATCCTGCG CGCCTACGAC CTGCTGGAGG ACGGCGGCAC CGACCTGCGC GACCGCCCCC TGTCGGAGCG CCGCGCGCGG CTGGAGGCCC TGGCCGCCGC CCTGCCCGAC ACGCTGCCCC TGCGGCTCTC CCCGACCCTG ACCTTCGACA GCTGGGACGC GCTGGCCCAA ATCCGCGCAA AATCGCGCGA GATGGGCGCC GAAGGGATCA TGCTCAAACG CCGCGCCTCC CCCTACCTCG CGGGCCGCAA GAAGGGCGAC TGGTGGAAAT GGAAGGTCGA TCCCCTGACC ATCGACGCGG TGATGATCTA CGCCCAGGCG GGCCACGGAC GCCGCGCGAA CCTTTTCACC GACTACACTT TCGCGGTCTG GGACGGAAAC GAGCTTGTCC CCTTCACCAA GGCCTATTCG GGCCTCACCG ACGCCGAGTT CCGCCAGATC ACCGCCTGGG TCCGCAAGAA CACCCTGGAA CGCTTCGGCC CCGTGCGCCG CGTAACCCCC GAACACGTCT TCGAGATCGC CTTCGAGGGG ATACAAGCCA GCCCCCGCCA CAAATCCGGC GTCGCCCTGC GGTTCCCGAG GATGCTGCGC TGGCGCAAGG ACAAACCGCT GCAAGAGGCG AACACGCTGG AGGATTTGAA AGGGATGTTG GAGGTGTATG GGTAG
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Protein sequence | MKDFAALFTS LDQTTKITPK VAALAAYFRT APEEDRLWTI ALLSGRRPKR TVTTTRLREW AAERAGIPLW LFEEAYPVVG DLAETIALVL PPPTRTSTRS LTDWITTIRG LAARDEPDRR AEILAAWDSL PETERFVFNK LITGGFRMGV SAKLMTRALS QATDIPEPEL AHRLMGDWTP ETTSFQSLVL TRDPAADLSK PYPFYLAYGL EDPPDTLGPP ADWQAEHKWD GIRGQLILRG GQHFVWSRGE ELMTDRFPEL AALRDFLPDG TVLDGELLAW DYNGAGDAPL PFNALQKRIG RKTVPKKLLS EAPVILRAYD LLEDGGTDLR DRPLSERRAR LEALAAALPD TLPLRLSPTL TFDSWDALAQ IRAKSREMGA EGIMLKRRAS PYLAGRKKGD WWKWKVDPLT IDAVMIYAQA GHGRRANLFT DYTFAVWDGN ELVPFTKAYS GLTDAEFRQI TAWVRKNTLE RFGPVRRVTP EHVFEIAFEG IQASPRHKSG VALRFPRMLR WRKDKPLQEA NTLEDLKGML EVYG
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