Gene Dshi_2569 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_2569 
Symbol 
ID5713466 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp2736718 
End bp2737746 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content66% 
IMG OID641268492 
Producthypothetical protein 
Protein accessionYP_001533903 
Protein GI159045109 
COG category[R] General function prediction only 
COG ID[COG3180] Putative ammonia monooxygenase 
TIGRFAM ID[TIGR03082] membrane protein AbrB duplication 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.110832 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.000000135786 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATCGGCA TTTTCACCGC CTTCGCGGTC GCGCTTGCGG GCGTCGGGCT GTTTCAATGG 
CTGGACCTGC CGCTGCCCTG GCTTCTGGGG CCGATCTTCG CCTGTCTGAC GGCGGCGATG
CTGGGCGTGC CCATGCGCAG CCTCAAGCCG ATCAACGAGG CGACGCGCAT GGTCCTTGGC
GTGGCGGTCG GGGCCACGCT GACGCCGCCG GTCCTGGCGA CCTTTCCCGC CATGTGGCCG
ACCCTGATGC TGGTTCCGGT GATGGTTGTT GCGATCGGAC TGGTGGGGGT ACCTTATTTC
CGCAGGCTGT GGGGGTATGA TCCGGCCACG GCCTATTACT CGGCCATGCC GGGCGGGTTG
CAGGACATGC TCCTTTTCGG GGAGGAGGCG GGGGGCAATG TGCGGACCCT GTCTCTGATC
CATGCGACGC GGGTGACGGT GATCGTCGTG GCATTGCCCT TTTTGCTCAA GGGGGTGTGG
GGGGCGGATC TGGGCAATCC GCCGGGTGCG TCTCTCGGTG TCGTGCCGGT TCACGAGATG
GGTTTGATGG GGCTGTGCGC GATTGTCGGC TGGTGGGGCG CGCGTCGGAT CGGGCTGTTC
GGCGCGGCCA TCCTCGGGCC GATGATCGTG ACCGGGGCTG CGGCCATGTC CGGACTTCTG
GAGAACCGCC CGCCGGCGGA GGCGATATGG GCCGCGCAGT TCTTCATCGG CGTGACCATC
GGCTGCAAAT ACGTGGGCAT CACCTGGGGC GAGATCCGAC GCGATCTTGC CGCGGGTCTG
GGGTTTTGCG GGATCCTGAT CGTGCTGACG CTGATCTTCG TCGAAGGCGT CTATCTCGCC
GGTCTTGCGC CGGGAATGGA GACGCTGCTG GCCTTTGCAC CGGGGGGGCA GGCGGAGTTG
ACGGTGCTGG CGCTGATCGT GGGCGCGGAT GTGGCCTTCG TGGTGGCGCA CCATATCCTG
CGGATTTTCG TGGTGATCCT CGGCGCGCCC ATCGTGGTGC GGATGCTTGG GGACAAGGAC
GCGCGCTAG
 
Protein sequence
MIGIFTAFAV ALAGVGLFQW LDLPLPWLLG PIFACLTAAM LGVPMRSLKP INEATRMVLG 
VAVGATLTPP VLATFPAMWP TLMLVPVMVV AIGLVGVPYF RRLWGYDPAT AYYSAMPGGL
QDMLLFGEEA GGNVRTLSLI HATRVTVIVV ALPFLLKGVW GADLGNPPGA SLGVVPVHEM
GLMGLCAIVG WWGARRIGLF GAAILGPMIV TGAAAMSGLL ENRPPAEAIW AAQFFIGVTI
GCKYVGITWG EIRRDLAAGL GFCGILIVLT LIFVEGVYLA GLAPGMETLL AFAPGGQAEL
TVLALIVGAD VAFVVAHHIL RIFVVILGAP IVVRMLGDKD AR