| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2512 |
|---|
| Symbol | dusA |
|---|
| ID | 5713409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2676018 |
|---|
| End bp | 2677034 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641268435 |
|---|
| Product | tRNA-dihydrouridine synthase A |
|---|
| Protein accession | YP_001533846 |
|---|
| Protein GI | 159045052 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0272244 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTAGTG AAGAAAAATC AAATTCTTGC GGCTCTTCTC GGCTTTCCGT GGCGCCCATG
ATGGATTGGA CCGACCGCCA TTGCCGGATG TTCCATCGGC AGTTCACGCA GCATGCGTTG
CTTTATACCG AGATGGTGAC GGCTCCGGCA GTTGTGCGGG GGGATGCGGG ACGGCTGCTG
GAGCATGCCG AAGCCGAGCA TCCCTTGGCG CTGCAACTCG GGGGGTCGGA CCCGGTGGAG
TTGGCGGAGG CTGTGCGGAT CGCTTGCGGC CATGGCTTCG ACGAAATCAA CCTGAATGTC
GGTTGCCCCT CGGACCGGGT GCAGTCGGGA TGTTTCGGTG CGGTTCTGAT GGAGCAGCCG
GCGCTTGTGG CGCGCTGCGT GGCGGCGATG ATCGCGGCTT CGGACGGTCC CGAGATCACC
GTGAAGTGCC GGATCGGTGT CGATGACCAG CAACCGGAGG AGATGCTGCC GGGGTTCCTG
CGCACGGTGT CGGAGGCCGG GGTGCGCCGG TTCACCATCC ACGCGCGCAA GGCGTGGTTG
CAGGGGCTCA GCCCGAAGGA GAACCGGGAT ATTCCGCCGC TGGACTATCC GCTGGTGGTG
CGGATGAAAC AGGCCTTCCC GGGGCTGCAC CTGTCGATCA ATGGCGGGAT CACCGATCTG
GATCAGGCGG CGGCGCATCT GGCATCGGGA CTCGACGGGG TAATGATCGG GCGCGCGGCC
TATCACGAGC CTGCCCGGGT GCTGGGCGAT GCGGACCGGC GTTTCTTCGG TGGGGCGGAA
ACGGTAAGTG CCGAGACGGC GGTGGAGGCG ATGCGCCCCT ACATCGCCGA CCATCTGGCG
CGCGGCGGCA AGCTGGCGCA GATCACGCGC CATATGCTCG GTGCCTTTGC CGGACGGCCC
GGGGCGCGGG GCTGGCGGCG AGTGCTGTCC GAAGAAGGGC ATCGCCCTGA GGCCGGGCTC
GGCACGCTGG ACCGGGCGCT GGCCCATATC GCGGGCCCAC ACCGGCTGGC CGGGTAG
|
|---|
| Protein sequence | MISEEKSNSC GSSRLSVAPM MDWTDRHCRM FHRQFTQHAL LYTEMVTAPA VVRGDAGRLL
EHAEAEHPLA LQLGGSDPVE LAEAVRIACG HGFDEINLNV GCPSDRVQSG CFGAVLMEQP
ALVARCVAAM IAASDGPEIT VKCRIGVDDQ QPEEMLPGFL RTVSEAGVRR FTIHARKAWL
QGLSPKENRD IPPLDYPLVV RMKQAFPGLH LSINGGITDL DQAAAHLASG LDGVMIGRAA
YHEPARVLGD ADRRFFGGAE TVSAETAVEA MRPYIADHLA RGGKLAQITR HMLGAFAGRP
GARGWRRVLS EEGHRPEAGL GTLDRALAHI AGPHRLAG
|
|---|
| |